About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Extended longitudinal single-cell RNA-seq data from ovarian cancer across multiple treatment phases

The dataset contains single-cell RNA-seq data of 73 tumor samples high-grade serous carcinoma (HGSC) patients sequenced with Novaseq. The samples were collected at primary, interval, and relapse treatment phases from multiple tissue sites. The files provided are fastq files.

Request Access

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE).

The data can only be used for cancer research that is inline with the research areas delineated in the patient consent. These include cancer biomarkers, prognostic factors, mechanisms behind the tumor evolution during treatment and treatment options. The data can also be used for validation of studies published by the contributing consortia (MUPETFaasi2, HERCULES, CHEMORESPONSE). See link for full description

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005010 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008867387 fastq.gz 2.9 GB
EGAF00008867389 fastq.gz 3.0 GB
EGAF00008867391 fastq.gz 2.8 GB
EGAF00008867393 fastq.gz 193.1 MB
EGAF00008867395 fastq.gz 2.8 GB
EGAF00008867396 fastq.gz 2.3 GB
EGAF00008867397 fastq.gz 193.7 MB
EGAF00008867398 fastq.gz 124.3 kB
EGAF00008867399 fastq.gz 296.8 kB
EGAF00008867400 fastq.gz 2.0 GB
EGAF00008867401 fastq.gz 2.0 GB
EGAF00008867402 fastq.gz 4.2 GB
EGAF00008867403 fastq.gz 2.3 GB
EGAF00008867404 fastq.gz 61.6 MB
EGAF00008867406 fastq.gz 186.3 kB
EGAF00008867408 fastq.gz 6.3 GB
EGAF00008867411 fastq.gz 5.7 GB
EGAF00008867413 fastq.gz 116.2 kB
EGAF00008867414 fastq.gz 5.7 GB
EGAF00008867415 fastq.gz 61.3 MB
EGAF00008867416 fastq.gz 119.8 kB
EGAF00008867417 fastq.gz 4.9 GB
EGAF00008867418 fastq.gz 193.3 MB
EGAF00008867419 fastq.gz 279.2 kB
EGAF00008867420 fastq.gz 7.3 GB
EGAF00008867426 fastq.gz 2.5 GB
EGAF00008867427 fastq.gz 2.3 GB
EGAF00008867428 fastq.gz 2.3 GB
EGAF00008867429 fastq.gz 119.5 kB
EGAF00008867430 fastq.gz 471.2 kB
EGAF00008867431 fastq.gz 7.0 GB
EGAF00008867433 fastq.gz 270.4 kB
EGAF00008867435 fastq.gz 4.9 GB
EGAF00008867437 fastq.gz 7.4 GB
EGAF00008867438 fastq.gz 5.7 GB
EGAF00008867439 fastq.gz 4.1 GB
EGAF00008867440 fastq.gz 9.7 GB
EGAF00008867441 fastq.gz 9.5 GB
EGAF00008867442 fastq.gz 1.8 GB
EGAF00008867443 fastq.gz 4.1 GB
EGAF00008867444 fastq.gz 6.4 GB
EGAF00008867446 fastq.gz 1.8 GB
EGAF00008867449 fastq.gz 4.2 GB
EGAF00008867451 fastq.gz 279.2 kB
EGAF00008871161 fastq.gz 61.3 MB
EGAF00008889088 fastq.gz 6.5 GB
EGAF00008889175 fastq.gz 3.2 GB
EGAF00008889178 fastq.gz 9.5 GB
EGAF00008889243 fastq.gz 4.0 GB
EGAF00008889277 fastq.gz 9.9 GB
EGAF00008889278 fastq.gz 19.0 GB
EGAF00008889281 fastq.gz 7.0 GB
EGAF00008889310 fastq.gz 12.4 GB
EGAF00008889318 fastq.gz 3.7 GB
EGAF00008889362 fastq.gz 7.6 GB
EGAF00008889365 fastq.gz 6.7 GB
EGAF00008889384 fastq.gz 10.5 GB
EGAF00008889403 fastq.gz 4.5 GB
EGAF00008889412 fastq.gz 595.1 kB
EGAF00008889415 fastq.gz 324.8 kB
EGAF00008889418 fastq.gz 2.5 GB
EGAF00008889433 fastq.gz 4.7 GB
EGAF00008889434 fastq.gz 1.5 GB
EGAF00008889436 fastq.gz 3.4 GB
EGAF00008889443 fastq.gz 2.6 GB
EGAF00008889445 fastq.gz 2.6 GB
EGAF00008889446 fastq.gz 79.5 kB
EGAF00008889450 fastq.gz 225.4 kB
EGAF00008889458 fastq.gz 1.4 GB
EGAF00008889460 fastq.gz 3.4 GB
EGAF00008889465 fastq.gz 2.1 GB
EGAF00008889470 fastq.gz 3.7 GB
EGAF00008889479 fastq.gz 11.0 GB
EGAF00008889485 fastq.gz 798.1 MB
EGAF00008889489 fastq.gz 2.2 GB
EGAF00008889491 fastq.gz 12.8 GB
EGAF00008889500 fastq.gz 2.0 GB
EGAF00008889502 fastq.gz 6.8 GB
EGAF00008889506 fastq.gz 81.6 kB
EGAF00008889509 fastq.gz 10.3 GB
EGAF00008889512 fastq.gz 2.8 GB
EGAF00008889514 fastq.gz 2.1 GB
EGAF00008889519 fastq.gz 18.3 GB
EGAF00008889541 fastq.gz 208.7 kB
EGAF00008889551 fastq.gz 43.2 kB
EGAF00008889552 fastq.gz 5.8 GB
EGAF00008889553 fastq.gz 9.6 GB
EGAF00008889556 fastq.gz 2.5 GB
EGAF00008889563 fastq.gz 4.4 GB
EGAF00008889570 fastq.gz 4.7 GB
EGAF00008889572 fastq.gz 592.2 kB
EGAF00008889573 fastq.gz 6.7 GB
EGAF00008889574 fastq.gz 2.5 GB
EGAF00008889577 fastq.gz 3.8 GB
EGAF00008889578 fastq.gz 800.5 MB
EGAF00008889580 fastq.gz 1.4 GB
EGAF00008889584 fastq.gz 178.9 kB
EGAF00008889588 fastq.gz 2.0 GB
EGAF00008889589 fastq.gz 3.4 GB
EGAF00008889591 fastq.gz 10.7 GB
EGAF00008889595 fastq.gz 3.8 GB
EGAF00008889606 fastq.gz 174.8 kB
EGAF00008889609 fastq.gz 2.5 GB
EGAF00008889617 fastq.gz 7.0 GB
EGAF00008889628 fastq.gz 18.5 GB
EGAF00008889630 fastq.gz 144.4 kB
EGAF00008889637 fastq.gz 139.8 kB
EGAF00008889639 fastq.gz 5.2 GB
EGAF00008889640 fastq.gz 3.6 GB
EGAF00008889648 fastq.gz 586.5 kB
EGAF00008889650 fastq.gz 16.4 GB
EGAF00008889654 fastq.gz 2.1 GB
EGAF00008889659 fastq.gz 4.2 GB
EGAF00008889665 fastq.gz 3.8 GB
EGAF00008889671 fastq.gz 342.1 kB
EGAF00008889677 fastq.gz 13.0 GB
EGAF00008889678 fastq.gz 4.4 GB
EGAF00008889687 fastq.gz 437.1 kB
EGAF00008889690 fastq.gz 4.8 GB
EGAF00008889692 fastq.gz 221.4 kB
EGAF00008889694 fastq.gz 2.1 GB
EGAF00008889698 fastq.gz 5.9 GB
EGAF00008889703 fastq.gz 6.6 GB
EGAF00008889706 fastq.gz 559.6 kB
EGAF00008889708 fastq.gz 7.4 GB
EGAF00008889713 fastq.gz 3.8 GB
EGAF00008889715 fastq.gz 10.4 GB
EGAF00008889717 fastq.gz 4.6 GB
EGAF00008889733 fastq.gz 5.5 GB
EGAF00008889739 fastq.gz 132.8 kB
EGAF00008889741 fastq.gz 10.4 GB
EGAF00008889742 fastq.gz 2.7 GB
EGAF00008889750 fastq.gz 4.5 GB
EGAF00008889751 fastq.gz 11.4 GB
EGAF00008889752 fastq.gz 11.1 GB
EGAF00008889753 fastq.gz 223.7 kB
EGAF00008889761 fastq.gz 6.1 GB
EGAF00008889765 fastq.gz 2.1 GB
EGAF00008889770 fastq.gz 356.8 kB
EGAF00008889777 fastq.gz 21.5 GB
EGAF00008889784 fastq.gz 10.8 GB
EGAF00008889792 fastq.gz 20.3 GB
EGAF00008889795 fastq.gz 6.9 GB
EGAF00008889803 fastq.gz 13.2 GB
EGAF00008889809 fastq.gz 6.8 GB
EGAF00008889810 fastq.gz 6.9 GB
EGAF00008889811 fastq.gz 1.4 GB
EGAF00008889812 fastq.gz 3.6 GB
EGAF00008889814 fastq.gz 3.8 GB
EGAF00008889820 fastq.gz 20.6 GB
EGAF00008889823 fastq.gz 6.8 GB
EGAF00008889840 fastq.gz 18.6 GB
EGAF00008889845 fastq.gz 1.6 GB
EGAF00008889853 fastq.gz 4.7 GB
EGAF00008889855 fastq.gz 3.9 GB
EGAF00008889858 fastq.gz 2.7 GB
EGAF00008889870 fastq.gz 6.9 GB
EGAF00008890521 fastq.gz 16.3 GB
EGAF00008890523 fastq.gz 6.2 GB
EGAF00008890524 fastq.gz 11.0 GB
EGAF00008891170 fastq.gz 8.2 GB
EGAF00008891172 fastq.gz 8.2 GB
EGAF00008891174 fastq.gz 6.3 GB
EGAF00008891175 fastq.gz 2.6 GB
EGAF00008891177 fastq.gz 1.4 GB
EGAF00008891179 fastq.gz 8.2 GB
EGAF00008891180 fastq.gz 2.9 GB
EGAF00008891181 fastq.gz 7.3 GB
EGAF00008891184 fastq.gz 2.6 GB
EGAF00008891185 fastq.gz 3.7 GB
EGAF00008891186 fastq.gz 3.6 GB
EGAF00008891187 fastq.gz 6.6 GB
EGAF00008891188 fastq.gz 1.4 GB
EGAF00008891189 fastq.gz 3.4 GB
EGAF00008891192 fastq.gz 1.4 GB
EGAF00008891193 fastq.gz 1.4 GB
EGAF00008891194 fastq.gz 3.4 GB
EGAF00008891195 fastq.gz 3.4 GB
EGAF00008891196 fastq.gz 7.4 GB
EGAF00008891198 fastq.gz 7.5 GB
EGAF00008891199 fastq.gz 2.7 GB
EGAF00008891200 fastq.gz 6.6 GB
EGAF00008891202 fastq.gz 2.7 GB
EGAF00008891203 fastq.gz 6.6 GB
EGAF00008891205 fastq.gz 2.0 GB
EGAF00008891206 fastq.gz 4.8 GB
EGAF00008891207 fastq.gz 153.5 kB
EGAF00008891209 fastq.gz 396.4 kB
EGAF00008891210 fastq.gz 162.5 kB
EGAF00008891211 fastq.gz 1.5 GB
EGAF00008891212 fastq.gz 2.0 GB
EGAF00008891213 fastq.gz 387.4 kB
EGAF00008891214 fastq.gz 1.5 GB
EGAF00008891215 fastq.gz 4.8 GB
EGAF00008891216 fastq.gz 155.8 kB
EGAF00008891219 fastq.gz 3.8 GB
EGAF00008891221 fastq.gz 3.8 GB
EGAF00008891223 fastq.gz 418.1 kB
EGAF00008891224 fastq.gz 2.8 GB
EGAF00008891227 fastq.gz 2.1 MB
EGAF00008891229 fastq.gz 746.8 kB
EGAF00008891231 fastq.gz 378.4 kB
EGAF00008891233 fastq.gz 743.3 kB
EGAF00008891234 fastq.gz 2.1 MB
EGAF00008891236 fastq.gz 7.4 GB
EGAF00008891237 fastq.gz 151.7 kB
EGAF00008891238 fastq.gz 751.8 kB
EGAF00008891239 fastq.gz 9.0 GB
EGAF00008891240 fastq.gz 2.1 MB
EGAF00008891242 fastq.gz 1.6 GB
EGAF00008891243 fastq.gz 3.0 GB
EGAF00008891246 fastq.gz 1.6 GB
EGAF00008891247 fastq.gz 3.9 GB
EGAF00008891248 fastq.gz 4.0 GB
EGAF00008891249 fastq.gz 5.0 GB
EGAF00008891250 fastq.gz 2.0 GB
EGAF00008891253 fastq.gz 2.0 GB
EGAF00008891254 fastq.gz 2.2 GB
EGAF00008891256 fastq.gz 5.0 GB
EGAF00008891257 fastq.gz 2.2 GB
EGAF00008891258 fastq.gz 5.6 GB
EGAF00008891259 fastq.gz 5.6 GB
EGAF00008891260 fastq.gz 2.8 GB
EGAF00008891261 fastq.gz 6.9 GB
EGAF00008891265 fastq.gz 2.7 GB
EGAF00008891269 fastq.gz 2.6 GB
EGAF00008891270 fastq.gz 6.8 GB
EGAF00008891271 fastq.gz 5.8 GB
EGAF00008891272 fastq.gz 5.8 GB
EGAF00008891273 fastq.gz 2.6 GB
EGAF00008891274 fastq.gz 3.9 GB
EGAF00008891276 fastq.gz 8.8 GB
EGAF00008891277 fastq.gz 3.9 GB
EGAF00008891279 fastq.gz 8.9 GB
EGAF00008891280 fastq.gz 2.5 GB
EGAF00008891281 fastq.gz 6.3 GB
EGAF00008891286 fastq.gz 2.2 GB
EGAF00008891287 fastq.gz 1.4 GB
EGAF00008891288 fastq.gz 2.4 GB
EGAF00008891289 fastq.gz 3.5 GB
EGAF00008891290 fastq.gz 2.1 GB
EGAF00008891291 fastq.gz 5.7 GB
EGAF00008891292 fastq.gz 3.6 GB
EGAF00008891294 fastq.gz 6.0 GB
EGAF00008891295 fastq.gz 1.4 GB
EGAF00008891297 fastq.gz 5.4 GB
EGAF00008891299 fastq.gz 5.9 GB
EGAF00008891300 fastq.gz 12.9 GB
EGAF00008891302 fastq.gz 6.0 GB
EGAF00008891303 fastq.gz 13.0 GB
EGAF00008891306 fastq.gz 6.0 GB
EGAF00008891307 fastq.gz 6.1 GB
EGAF00008891309 fastq.gz 3.3 GB
EGAF00008891310 fastq.gz 3.3 GB
EGAF00008891313 fastq.gz 2.4 GB
EGAF00008891314 fastq.gz 5.6 GB
EGAF00008891315 fastq.gz 2.5 GB
EGAF00008891316 fastq.gz 5.7 GB
EGAF00008891318 fastq.gz 2.8 GB
EGAF00008891319 fastq.gz 6.5 GB
EGAF00008891323 fastq.gz 2.9 GB
EGAF00008891324 fastq.gz 3.5 GB
EGAF00008891325 fastq.gz 3.0 GB
EGAF00008891326 fastq.gz 6.9 GB
EGAF00008891327 fastq.gz 7.1 GB
EGAF00008891329 fastq.gz 2.9 GB
EGAF00008891330 fastq.gz 7.9 GB
EGAF00008891331 fastq.gz 3.5 GB
EGAF00008891332 fastq.gz 6.7 GB
EGAF00008891333 fastq.gz 8.0 GB
EGAF00008891337 fastq.gz 2.0 GB
EGAF00008891338 fastq.gz 2.1 GB
EGAF00008891341 fastq.gz 3.0 GB
EGAF00008891343 fastq.gz 6.6 GB
EGAF00008891345 fastq.gz 2.9 GB
EGAF00008891347 fastq.gz 6.5 GB
EGAF00008891350 fastq.gz 3.4 GB
EGAF00008891351 fastq.gz 7.4 GB
EGAF00008891353 fastq.gz 3.3 GB
EGAF00008891354 fastq.gz 7.4 GB
EGAF00008891356 fastq.gz 3.2 GB
EGAF00008891357 fastq.gz 7.0 GB
EGAF00008891359 fastq.gz 3.2 GB
EGAF00008891361 fastq.gz 3.1 GB
EGAF00008891363 fastq.gz 7.0 GB
EGAF00008891365 fastq.gz 3.2 GB
EGAF00008891366 fastq.gz 7.0 GB
EGAF00008891369 fastq.gz 3.4 GB
EGAF00008891370 fastq.gz 7.7 GB
EGAF00008891373 fastq.gz 2.9 GB
EGAF00008891374 fastq.gz 7.2 GB
EGAF00008891375 fastq.gz 3.4 GB
EGAF00008891376 fastq.gz 7.7 GB
EGAF00008891378 fastq.gz 2.8 GB
EGAF00008891379 fastq.gz 7.1 GB
EGAF00008891380 fastq.gz 245.0 kB
EGAF00008891382 fastq.gz 231.8 kB
EGAF00008891384 fastq.gz 220.2 kB
EGAF00008891385 fastq.gz 562.2 kB
EGAF00008891386 fastq.gz 232.3 kB
EGAF00008891387 fastq.gz 635.0 kB
EGAF00008891389 fastq.gz 99.2 kB
EGAF00008891390 fastq.gz 226.5 kB
EGAF00008891392 fastq.gz 96.7 kB
EGAF00008891393 fastq.gz 220.8 kB
EGAF00008891394 fastq.gz 92.1 kB
EGAF00008891395 fastq.gz 206.1 kB
EGAF00008891396 fastq.gz 4.7 GB
EGAF00008891397 fastq.gz 594.4 kB
EGAF00008891400 fastq.gz 7.8 GB
EGAF00008891402 fastq.gz 633.8 kB
EGAF00008891404 fastq.gz 2.6 GB
EGAF00008891405 fastq.gz 1.8 GB
EGAF00008891406 fastq.gz 2.2 GB
EGAF00008891407 fastq.gz 6.9 GB
EGAF00008891408 fastq.gz 2.0 GB
EGAF00008891409 fastq.gz 6.0 GB
EGAF00008891544 fastq.gz 4.7 GB
EGAF00008891581 fastq.gz 3.0 GB
EGAF00008891642 fastq.gz 4.6 GB
EGAF00008891694 fastq.gz 2.6 GB
EGAF00008891721 fastq.gz 800.2 MB
EGAF00008892044 fastq.gz 3.4 GB
EGAF00008892126 fastq.gz 20.8 GB
EGAF00008892198 fastq.gz 4.5 GB
EGAF00008892199 fastq.gz 7.4 GB
EGAF00008899487 fastq.gz 7.0 GB
EGAF00008936039 fastq.gz 6.4 GB
328 Files (1.4 TB)