About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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cfDNA shallow Whole-Genome sequencing - pilot run

cfDNA shallow Whole-Genome sequencing from 30 patients with mTNBC in the TONIC trial, including 2 timepoints: baseline and week 12.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001308 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000446549 bam 182.5 MB
EGAF50000446550 bam 457.6 MB
EGAF50000446551 bam 353.1 MB
EGAF50000446552 bam 189.7 MB
EGAF50000446553 bam 248.0 MB
EGAF50000446566 bam 106.4 MB
EGAF50000446725 bam 196.1 MB
EGAF50000446726 bam 205.0 MB
EGAF50000446727 bam 362.6 MB
EGAF50000446728 bam 266.0 MB
EGAF50000446729 bam 432.9 MB
EGAF50000446730 bam 263.2 MB
EGAF50000446847 bam 407.3 MB
EGAF50000446848 bam 221.4 MB
EGAF50000446849 bam 217.8 MB
EGAF50000446850 bam 179.4 MB
EGAF50000446851 bam 191.7 MB
EGAF50000446852 bam 198.2 MB
EGAF50000446853 bam 187.6 MB
EGAF50000446854 bam 195.4 MB
EGAF50000446855 bam 203.0 MB
EGAF50000446856 bam 311.4 MB
EGAF50000446857 bam 335.4 MB
EGAF50000446862 bam 139.9 MB
EGAF50000446863 bam 180.7 MB
EGAF50000446864 bam 160.7 MB
EGAF50000446865 bam 151.8 MB
EGAF50000446866 bam 228.6 MB
EGAF50000446867 bam 175.3 MB
EGAF50000446868 bam 285.6 MB
EGAF50000446869 bam 352.0 MB
EGAF50000446870 bam 302.6 MB
EGAF50000446871 bam 157.8 MB
EGAF50000446872 bam 414.2 MB
EGAF50000446873 bam 168.2 MB
EGAF50000446874 bam 294.2 MB
EGAF50000446875 bam 321.5 MB
EGAF50000446876 bam 101.1 MB
EGAF50000446877 bam 160.7 MB
EGAF50000446878 bam 283.7 MB
EGAF50000446879 bam 196.1 MB
EGAF50000446880 bam 341.6 MB
EGAF50000446881 bam 395.1 MB
EGAF50000446882 bam 344.9 MB
EGAF50000446883 bam 422.1 MB
EGAF50000446884 bam 370.3 MB
EGAF50000446885 bam 106.6 MB
EGAF50000446886 bam 158.4 MB
EGAF50000446887 bam 215.7 MB
EGAF50000446888 bam 234.4 MB
EGAF50000446889 bam 168.2 MB
EGAF50000446890 bam 207.1 MB
EGAF50000446891 bam 202.8 MB
EGAF50000446892 bam 302.5 MB
EGAF50000446893 bam 219.7 MB
EGAF50000446894 bam 136.5 MB
EGAF50000446895 bam 161.2 MB
EGAF50000446896 bam 144.3 MB
EGAF50000446897 bam 172.5 MB
EGAF50000446898 bam 253.8 MB
60 Files (14.5 GB)