cfDNA shallow Whole-Genome sequencing - expansion run
cfDNA shallow Whole-Genome sequencing of the remaing patients with mTNBC in the TONIC trial, including 3 timepoints: baseline, week 6 and week 12. The week 6 data of the patients in the pilot run was sequenced here.
- 07/10/2025
- 168 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001308 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000446546 | bam | 2.0 GB |
|
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| EGAF50000446547 | bam | 1.6 GB |
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| EGAF50000446548 | bam | 1.8 GB |
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| EGAF50000446554 | bam | 2.0 GB |
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| EGAF50000446555 | bam | 1.7 GB |
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| EGAF50000446556 | bam | 2.6 GB |
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| EGAF50000446557 | bam | 2.3 GB |
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| EGAF50000446558 | bam | 1.5 GB |
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| EGAF50000446559 | bam | 1.7 GB |
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| EGAF50000446560 | bam | 1.9 GB |
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| EGAF50000446567 | bam | 1.7 GB |
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| EGAF50000446568 | bam | 2.1 GB |
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| EGAF50000446569 | bam | 3.5 GB |
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| EGAF50000446570 | bam | 1.6 GB |
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| EGAF50000446571 | bam | 2.2 GB |
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| EGAF50000446572 | bam | 1.8 GB |
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| EGAF50000446573 | bam | 2.1 GB |
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| EGAF50000446574 | bam | 2.1 GB |
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| EGAF50000446575 | bam | 2.0 GB |
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| EGAF50000446576 | bam | 1.6 GB |
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| EGAF50000446577 | bam | 1.9 GB |
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| EGAF50000446578 | bam | 1.9 GB |
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| EGAF50000446579 | bam | 1.9 GB |
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| EGAF50000446580 | bam | 1.4 GB |
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| EGAF50000446581 | bam | 1.8 GB |
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| EGAF50000446582 | bam | 1.9 GB |
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| EGAF50000446583 | bam | 2.1 GB |
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| EGAF50000446584 | bam | 2.7 GB |
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| EGAF50000446585 | bam | 2.0 GB |
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| EGAF50000446586 | bam | 1.7 GB |
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| EGAF50000446587 | bam | 2.3 GB |
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| EGAF50000446588 | bam | 2.3 GB |
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| EGAF50000446589 | bam | 2.3 GB |
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| EGAF50000446590 | bam | 2.1 GB |
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| EGAF50000446591 | bam | 1.7 GB |
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| EGAF50000446592 | bam | 2.3 GB |
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| EGAF50000446593 | bam | 1.9 GB |
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| EGAF50000446594 | bam | 3.8 GB |
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| EGAF50000446595 | bam | 1.8 GB |
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| EGAF50000446596 | bam | 2.1 GB |
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| EGAF50000446597 | bam | 2.0 GB |
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| EGAF50000446598 | bam | 1.7 GB |
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| EGAF50000446599 | bam | 2.1 GB |
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| EGAF50000446600 | bam | 2.1 GB |
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| EGAF50000446601 | bam | 2.1 GB |
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| EGAF50000446602 | bam | 2.0 GB |
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| EGAF50000446603 | bam | 2.3 GB |
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| EGAF50000446604 | bam | 2.0 GB |
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| EGAF50000446605 | bam | 2.1 GB |
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| EGAF50000446606 | bam | 1.9 GB |
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| EGAF50000446607 | bam | 2.0 GB |
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| EGAF50000446608 | bam | 2.0 GB |
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| EGAF50000446609 | bam | 1.9 GB |
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| EGAF50000446610 | bam | 1.9 GB |
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| EGAF50000446611 | bam | 2.3 GB |
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| EGAF50000446612 | bam | 2.4 GB |
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| EGAF50000446613 | bam | 2.4 GB |
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| EGAF50000446614 | bam | 1.9 GB |
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| EGAF50000446615 | bam | 2.0 GB |
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| EGAF50000446616 | bam | 2.3 GB |
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| EGAF50000446617 | bam | 2.1 GB |
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| EGAF50000446618 | bam | 1.8 GB |
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| EGAF50000446619 | bam | 2.1 GB |
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| EGAF50000446620 | bam | 1.9 GB |
|
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| EGAF50000446621 | bam | 2.0 GB |
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| EGAF50000446622 | bam | 2.1 GB |
|
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| EGAF50000446623 | bam | 427.2 MB |
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| EGAF50000446624 | bam | 2.5 GB |
|
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| EGAF50000446625 | bam | 2.7 GB |
|
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| EGAF50000446626 | bam | 2.6 GB |
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| EGAF50000446627 | bam | 2.0 GB |
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| EGAF50000446628 | bam | 2.7 GB |
|
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| EGAF50000446629 | bam | 1.8 GB |
|
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| EGAF50000446630 | bam | 2.3 GB |
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| EGAF50000446631 | bam | 2.1 GB |
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| EGAF50000446632 | bam | 2.1 GB |
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| EGAF50000446633 | bam | 1.8 GB |
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| EGAF50000446634 | bam | 1.9 GB |
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| EGAF50000446635 | bam | 2.3 GB |
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| EGAF50000446636 | bam | 2.2 GB |
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| EGAF50000446637 | bam | 2.1 GB |
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| EGAF50000446638 | bam | 2.2 GB |
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| EGAF50000446639 | bam | 2.3 GB |
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| EGAF50000446640 | bam | 1.8 GB |
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| EGAF50000446641 | bam | 2.2 GB |
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| EGAF50000446642 | bam | 2.0 GB |
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| EGAF50000446643 | bam | 1.8 GB |
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| EGAF50000446644 | bam | 2.0 GB |
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| EGAF50000446645 | bam | 2.0 GB |
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| EGAF50000446646 | bam | 2.4 GB |
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| EGAF50000446647 | bam | 2.0 GB |
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| EGAF50000446648 | bam | 2.3 GB |
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| EGAF50000446649 | bam | 1.7 GB |
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| EGAF50000446650 | bam | 2.1 GB |
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| EGAF50000446651 | bam | 1.9 GB |
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| EGAF50000446652 | bam | 1.7 GB |
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| EGAF50000446653 | bam | 2.0 GB |
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| EGAF50000446654 | bam | 1.7 GB |
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| EGAF50000446655 | bam | 2.0 GB |
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| EGAF50000446656 | bam | 2.3 GB |
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| EGAF50000446657 | bam | 1.7 GB |
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| EGAF50000446658 | bam | 1.7 GB |
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| EGAF50000446659 | bam | 1.4 GB |
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| EGAF50000446660 | bam | 2.1 GB |
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| EGAF50000446661 | bam | 1.9 GB |
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| EGAF50000446662 | bam | 1.8 GB |
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| EGAF50000446663 | bam | 2.0 GB |
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| EGAF50000446664 | bam | 1.7 GB |
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| EGAF50000446665 | bam | 2.0 GB |
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| EGAF50000446666 | bam | 1.7 GB |
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| EGAF50000446667 | bam | 1.8 GB |
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| EGAF50000446668 | bam | 1.8 GB |
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| EGAF50000446669 | bam | 1.7 GB |
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| EGAF50000446670 | bam | 1.7 GB |
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| EGAF50000446671 | bam | 1.6 GB |
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| EGAF50000446672 | bam | 2.0 GB |
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| EGAF50000446673 | bam | 1.9 GB |
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| EGAF50000446674 | bam | 1.8 GB |
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| EGAF50000446675 | bam | 1.9 GB |
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| EGAF50000446676 | bam | 2.5 GB |
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| EGAF50000446677 | bam | 280.8 MB |
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| EGAF50000446678 | bam | 1.8 GB |
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| EGAF50000446679 | bam | 2.0 GB |
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| EGAF50000446680 | bam | 1.8 GB |
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| EGAF50000446681 | bam | 2.1 GB |
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| EGAF50000446682 | bam | 2.0 GB |
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| EGAF50000446683 | bam | 1.9 GB |
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| EGAF50000446684 | bam | 1.6 GB |
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| EGAF50000446685 | bam | 2.2 GB |
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| EGAF50000446686 | bam | 2.0 GB |
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| EGAF50000446687 | bam | 1.7 GB |
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| EGAF50000446688 | bam | 2.3 GB |
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| EGAF50000446689 | bam | 1.4 GB |
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| EGAF50000446690 | bam | 1.2 GB |
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| EGAF50000446691 | bam | 1.9 GB |
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| EGAF50000446692 | bam | 1.7 GB |
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| EGAF50000446693 | bam | 2.0 GB |
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| EGAF50000446694 | bam | 2.3 GB |
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| EGAF50000446695 | bam | 1.7 GB |
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| EGAF50000446696 | bam | 1.8 GB |
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| EGAF50000446697 | bam | 1.9 GB |
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| EGAF50000446698 | bam | 2.0 GB |
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| EGAF50000446699 | bam | 2.3 GB |
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| EGAF50000446700 | bam | 1.9 GB |
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| EGAF50000446701 | bam | 1.9 GB |
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| EGAF50000446702 | bam | 2.1 GB |
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| EGAF50000446703 | bam | 2.1 GB |
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| EGAF50000446704 | bam | 2.2 GB |
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| EGAF50000446705 | bam | 1.9 GB |
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| EGAF50000446706 | bam | 2.1 GB |
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| EGAF50000446707 | bam | 2.3 GB |
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| EGAF50000446708 | bam | 1.9 GB |
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| EGAF50000446709 | bam | 2.3 GB |
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| EGAF50000446710 | bam | 2.0 GB |
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| EGAF50000446711 | bam | 2.3 GB |
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| EGAF50000446712 | bam | 2.3 GB |
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| EGAF50000446713 | bam | 1.6 GB |
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| EGAF50000446714 | bam | 1.6 GB |
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| EGAF50000446715 | bam | 1.6 GB |
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| EGAF50000446716 | bam | 1.8 GB |
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| EGAF50000446717 | bam | 2.0 GB |
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| EGAF50000446718 | bam | 1.8 GB |
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| EGAF50000446719 | bam | 1.8 GB |
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| EGAF50000446720 | bam | 1.6 GB |
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| EGAF50000446721 | bam | 2.0 GB |
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| EGAF50000446731 | bam | 1.7 GB |
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| EGAF50000446732 | bam | 2.2 GB |
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| EGAF50000446733 | bam | 1.2 GB |
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| 168 Files (331.8 GB) | ||||