About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Spatial transcriptomics

This dataset contains raw sequencing and processed data of spatially resolved transcriptomes. The data were generated with 10x Visium probe-based assay on FFPE tissues of 30 ST-EPN tumour resections. Raw data contain two-lane fastq files of the sequencing. Processed data contain aligned and filtered .h5 counts matrices as well as positional files as generated by 10x SpaceRanger.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

Access policy for study ST-EPN heterogeneity

Access to this dataset is controlled and will be considered upon request. Data may be used for non-commercial research purposes only. Redistribution of the data is prohibited.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001318 Cancer Genomics
  • Changed title of the respective study.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000450977 h5 11.5 MB
EGAF50000450978 fastq.gz 256.1 MB
EGAF50000450979 fastq.gz 267.2 MB
EGAF50000450980 fastq.gz 917.0 MB
EGAF50000450981 fastq.gz 259.9 MB
EGAF50000450982 fastq.gz 1.3 GB
EGAF50000450983 fastq.gz 260.9 MB
EGAF50000450984 fastq.gz 941.2 MB
EGAF50000450985 json 341 Bytes
EGAF50000450986 csv 182.1 kB
EGAF50000450987 h5 694.6 kB
EGAF50000450988 fastq.gz 253.8 MB
EGAF50000450989 fastq.gz 250.3 MB
EGAF50000450990 fastq.gz 1.3 GB
EGAF50000450991 fastq.gz 946.5 MB
EGAF50000450992 fastq.gz 253.5 MB
EGAF50000450993 fastq.gz 1.4 GB
EGAF50000450994 fastq.gz 253.2 MB
EGAF50000450995 fastq.gz 947.8 MB
EGAF50000450996 json 342 Bytes
EGAF50000450997 csv 181.6 kB
EGAF50000450998 h5 20.5 MB
EGAF50000450999 fastq.gz 221.4 MB
EGAF50000451000 fastq.gz 1.4 GB
EGAF50000451001 fastq.gz 226.6 MB
EGAF50000451002 fastq.gz 840.4 MB
EGAF50000451003 fastq.gz 208.3 MB
EGAF50000451004 fastq.gz 212.7 MB
EGAF50000451005 fastq.gz 1.7 GB
EGAF50000451006 fastq.gz 777.1 MB
EGAF50000451007 json 323 Bytes
EGAF50000451008 csv 181.7 kB
EGAF50000451009 h5 16.6 MB
EGAF50000451010 fastq.gz 220.5 MB
EGAF50000451011 fastq.gz 241.8 MB
EGAF50000451012 fastq.gz 1.6 GB
EGAF50000451013 fastq.gz 825.2 MB
EGAF50000451014 fastq.gz 208.6 MB
EGAF50000451015 fastq.gz 216.3 MB
EGAF50000451016 fastq.gz 771.1 MB
EGAF50000451017 json 342 Bytes
EGAF50000451018 fastq.gz 1.7 GB
EGAF50000451019 csv 182.1 kB
EGAF50000451020 h5 24.2 MB
EGAF50000451021 fastq.gz 209.7 MB
EGAF50000451022 fastq.gz 234.2 MB
EGAF50000451023 fastq.gz 1.6 GB
EGAF50000451024 fastq.gz 757.2 MB
EGAF50000451025 fastq.gz 213.9 MB
EGAF50000451026 fastq.gz 236.1 MB
EGAF50000451027 fastq.gz 1.1 GB
EGAF50000451028 fastq.gz 774.9 MB
EGAF50000451029 json 324 Bytes
EGAF50000451030 csv 181.7 kB
EGAF50000451031 h5 16.9 MB
EGAF50000451032 fastq.gz 255.6 MB
EGAF50000451033 fastq.gz 281.4 MB
EGAF50000451034 fastq.gz 1.1 GB
EGAF50000451035 fastq.gz 943.6 MB
EGAF50000451036 fastq.gz 261.1 MB
EGAF50000451037 fastq.gz 276.5 MB
EGAF50000451038 fastq.gz 1.4 GB
EGAF50000451039 fastq.gz 979.0 MB
EGAF50000451040 json 342 Bytes
EGAF50000451041 csv 182.0 kB
EGAF50000451042 h5 14.3 MB
EGAF50000451043 fastq.gz 1.4 GB
EGAF50000451044 fastq.gz 313.0 MB
EGAF50000451045 fastq.gz 244.4 MB
EGAF50000451046 fastq.gz 919.5 MB
EGAF50000451047 fastq.gz 291.8 MB
EGAF50000451048 fastq.gz 235.1 MB
EGAF50000451049 fastq.gz 1.9 GB
EGAF50000451050 fastq.gz 874.0 MB
EGAF50000451051 json 341 Bytes
EGAF50000451052 csv 181.6 kB
EGAF50000451053 h5 11.8 MB
EGAF50000451054 fastq.gz 136.3 MB
EGAF50000451055 fastq.gz 131.6 MB
EGAF50000451056 fastq.gz 424.9 MB
EGAF50000451057 fastq.gz 1.8 GB
EGAF50000451058 fastq.gz 115.6 MB
EGAF50000451059 fastq.gz 120.4 MB
EGAF50000451060 fastq.gz 878.6 MB
EGAF50000451061 fastq.gz 386.6 MB
EGAF50000451062 json 323 Bytes
EGAF50000451063 csv 181.5 kB
EGAF50000451064 h5 14.7 MB
EGAF50000451065 fastq.gz 184.9 MB
EGAF50000451066 fastq.gz 171.2 MB
EGAF50000451067 fastq.gz 799.7 MB
EGAF50000451068 fastq.gz 580.8 MB
EGAF50000451069 fastq.gz 172.7 MB
EGAF50000451070 fastq.gz 159.2 MB
EGAF50000451071 fastq.gz 1.2 GB
EGAF50000451072 fastq.gz 541.5 MB
EGAF50000451073 json 342 Bytes
EGAF50000451074 csv 182.1 kB
EGAF50000451075 h5 9.3 MB
EGAF50000451076 fastq.gz 265.4 MB
EGAF50000451077 fastq.gz 222.7 MB
EGAF50000451078 fastq.gz 1.1 GB
EGAF50000451079 fastq.gz 793.3 MB
EGAF50000451080 fastq.gz 255.4 MB
EGAF50000451081 fastq.gz 222.5 MB
EGAF50000451082 fastq.gz 1.2 GB
EGAF50000451083 fastq.gz 814.3 MB
EGAF50000451084 json 342 Bytes
EGAF50000451085 csv 182.0 kB
EGAF50000451086 h5 22.1 MB
EGAF50000451087 fastq.gz 281.5 MB
EGAF50000451088 fastq.gz 291.4 MB
EGAF50000451089 fastq.gz 1.2 GB
EGAF50000451090 fastq.gz 897.0 MB
EGAF50000451091 fastq.gz 270.8 MB
EGAF50000451092 fastq.gz 298.4 MB
EGAF50000451093 fastq.gz 1.3 GB
EGAF50000451094 json 342 Bytes
EGAF50000451095 fastq.gz 932.3 MB
EGAF50000451096 csv 181.9 kB
EGAF50000451097 h5 25.9 MB
EGAF50000451098 fastq.gz 261.6 MB
EGAF50000451099 fastq.gz 249.5 MB
EGAF50000451100 fastq.gz 1.4 GB
EGAF50000451101 fastq.gz 787.9 MB
EGAF50000451102 fastq.gz 258.2 MB
EGAF50000451103 fastq.gz 1.2 GB
EGAF50000451104 fastq.gz 237.3 MB
EGAF50000451105 fastq.gz 800.7 MB
EGAF50000451106 json 324 Bytes
EGAF50000451107 csv 181.5 kB
EGAF50000451108 h5 19.8 MB
EGAF50000451109 fastq.gz 242.9 MB
EGAF50000451110 fastq.gz 1.2 GB
EGAF50000451111 fastq.gz 229.0 MB
EGAF50000451112 fastq.gz 887.5 MB
EGAF50000451113 fastq.gz 239.8 MB
EGAF50000451114 fastq.gz 232.2 MB
EGAF50000451115 fastq.gz 1.3 GB
EGAF50000451116 fastq.gz 895.4 MB
EGAF50000451117 json 342 Bytes
EGAF50000451118 csv 181.9 kB
EGAF50000451119 h5 12.6 MB
EGAF50000451120 fastq.gz 361.8 MB
EGAF50000451121 fastq.gz 1.3 GB
EGAF50000451122 fastq.gz 312.1 MB
EGAF50000451123 fastq.gz 1.1 GB
EGAF50000451124 fastq.gz 352.3 MB
EGAF50000451125 fastq.gz 1.6 GB
EGAF50000451126 fastq.gz 309.4 MB
EGAF50000451127 fastq.gz 1.1 GB
EGAF50000451128 json 342 Bytes
EGAF50000451129 csv 181.5 kB
EGAF50000451130 h5 11.2 MB
EGAF50000451131 fastq.gz 229.3 MB
EGAF50000451132 fastq.gz 1.6 GB
EGAF50000451133 fastq.gz 272.0 MB
EGAF50000451134 fastq.gz 885.6 MB
EGAF50000451135 fastq.gz 95.0 MB
EGAF50000451136 fastq.gz 129.7 MB
EGAF50000451137 fastq.gz 362.3 MB
EGAF50000451138 fastq.gz 1.3 GB
EGAF50000451139 json 316 Bytes
EGAF50000451140 csv 186.1 kB
EGAF50000451141 h5 14.4 MB
EGAF50000451142 fastq.gz 267.2 MB
EGAF50000451143 fastq.gz 542.7 MB
EGAF50000451144 fastq.gz 305.6 MB
EGAF50000451145 fastq.gz 971.0 MB
EGAF50000451146 fastq.gz 151.6 MB
EGAF50000451147 fastq.gz 159.2 MB
EGAF50000451148 fastq.gz 1.4 GB
EGAF50000451149 fastq.gz 540.3 MB
EGAF50000451150 json 316 Bytes
EGAF50000451151 csv 186.4 kB
EGAF50000451152 h5 18.8 MB
EGAF50000451153 fastq.gz 231.7 MB
EGAF50000451154 fastq.gz 821.5 MB
EGAF50000451155 fastq.gz 246.7 MB
EGAF50000451156 fastq.gz 836.7 MB
EGAF50000451157 fastq.gz 210.9 MB
EGAF50000451158 fastq.gz 221.6 MB
EGAF50000451159 fastq.gz 1.7 GB
EGAF50000451160 fastq.gz 766.6 MB
EGAF50000451161 json 324 Bytes
EGAF50000451162 csv 181.5 kB
EGAF50000451163 h5 17.5 MB
EGAF50000451164 fastq.gz 212.4 MB
EGAF50000451165 fastq.gz 216.7 MB
EGAF50000451166 fastq.gz 789.5 MB
EGAF50000451167 fastq.gz 1.6 GB
EGAF50000451168 fastq.gz 199.3 MB
EGAF50000451169 fastq.gz 198.3 MB
EGAF50000451170 fastq.gz 732.1 MB
EGAF50000451171 fastq.gz 1.6 GB
EGAF50000451172 json 324 Bytes
EGAF50000451173 csv 182.0 kB
EGAF50000451174 h5 4.9 MB
EGAF50000451175 fastq.gz 65.9 MB
EGAF50000451176 fastq.gz 59.9 MB
EGAF50000451177 fastq.gz 202.0 MB
EGAF50000451178 fastq.gz 420.6 MB
EGAF50000451179 fastq.gz 59.7 MB
EGAF50000451180 fastq.gz 54.3 MB
EGAF50000451181 fastq.gz 183.5 MB
EGAF50000451182 fastq.gz 1.5 GB
EGAF50000451183 json 341 Bytes
EGAF50000451184 csv 181.5 kB
EGAF50000451185 h5 6.4 MB
EGAF50000451186 fastq.gz 380.8 MB
EGAF50000451187 fastq.gz 119.7 MB
EGAF50000451188 fastq.gz 118.3 MB
EGAF50000451189 fastq.gz 418.9 MB
EGAF50000451190 fastq.gz 109.9 MB
EGAF50000451191 fastq.gz 111.9 MB
EGAF50000451192 fastq.gz 879.8 MB
EGAF50000451193 fastq.gz 380.0 MB
EGAF50000451194 json 324 Bytes
EGAF50000451195 csv 182.1 kB
EGAF50000451196 h5 7.0 MB
EGAF50000451197 fastq.gz 116.4 MB
EGAF50000451198 fastq.gz 116.8 MB
EGAF50000451199 fastq.gz 798.3 MB
EGAF50000451200 fastq.gz 398.5 MB
EGAF50000451201 fastq.gz 111.6 MB
EGAF50000451202 fastq.gz 114.1 MB
EGAF50000451203 fastq.gz 388.0 MB
EGAF50000451204 fastq.gz 836.5 MB
EGAF50000451205 json 342 Bytes
EGAF50000451206 csv 181.6 kB
EGAF50000451207 h5 19.4 MB
EGAF50000451208 fastq.gz 186.3 MB
EGAF50000451209 fastq.gz 198.4 MB
EGAF50000451210 fastq.gz 814.6 MB
EGAF50000451211 fastq.gz 651.3 MB
EGAF50000451212 fastq.gz 169.5 MB
EGAF50000451213 fastq.gz 177.2 MB
EGAF50000451214 fastq.gz 1.4 GB
EGAF50000451215 fastq.gz 606.9 MB
EGAF50000451216 json 324 Bytes
EGAF50000451217 csv 181.6 kB
EGAF50000451218 h5 14.8 MB
EGAF50000451219 fastq.gz 168.2 MB
EGAF50000451220 fastq.gz 175.8 MB
EGAF50000451221 fastq.gz 610.0 MB
EGAF50000451222 fastq.gz 1.3 GB
EGAF50000451223 fastq.gz 157.9 MB
EGAF50000451224 fastq.gz 166.0 MB
EGAF50000451225 fastq.gz 563.1 MB
EGAF50000451226 fastq.gz 1.3 GB
EGAF50000451227 json 341 Bytes
EGAF50000451228 csv 182.0 kB
EGAF50000451229 h5 6.9 MB
EGAF50000451230 fastq.gz 135.1 MB
EGAF50000451231 fastq.gz 142.0 MB
EGAF50000451232 fastq.gz 503.7 MB
EGAF50000451233 fastq.gz 1.2 GB
EGAF50000451234 fastq.gz 128.9 MB
EGAF50000451235 fastq.gz 134.0 MB
EGAF50000451236 fastq.gz 470.5 MB
EGAF50000451237 fastq.gz 1.1 GB
EGAF50000451238 json 341 Bytes
EGAF50000451239 csv 181.6 kB
EGAF50000451240 h5 4.0 MB
EGAF50000451241 fastq.gz 215.9 MB
EGAF50000451242 fastq.gz 204.7 MB
EGAF50000451243 fastq.gz 983.4 MB
EGAF50000451244 fastq.gz 698.1 MB
EGAF50000451245 fastq.gz 204.7 MB
EGAF50000451246 fastq.gz 194.0 MB
EGAF50000451247 fastq.gz 1.4 GB
EGAF50000451248 fastq.gz 661.0 MB
EGAF50000451249 json 324 Bytes
EGAF50000451250 csv 181.5 kB
EGAF50000451251 h5 9.8 MB
EGAF50000451252 fastq.gz 178.1 MB
EGAF50000451253 fastq.gz 162.0 MB
EGAF50000451254 fastq.gz 576.6 MB
EGAF50000451255 fastq.gz 1.4 GB
EGAF50000451256 fastq.gz 158.7 MB
EGAF50000451257 fastq.gz 149.4 MB
EGAF50000451258 fastq.gz 536.0 MB
EGAF50000451259 fastq.gz 1.2 GB
EGAF50000451260 json 341 Bytes
EGAF50000451261 csv 181.9 kB
EGAF50000451262 h5 16.0 MB
EGAF50000451263 fastq.gz 187.9 MB
EGAF50000451264 fastq.gz 215.0 MB
EGAF50000451265 fastq.gz 1.1 GB
EGAF50000451266 fastq.gz 688.9 MB
EGAF50000451267 fastq.gz 178.0 MB
EGAF50000451268 fastq.gz 193.1 MB
EGAF50000451269 fastq.gz 648.6 MB
EGAF50000451270 fastq.gz 1.4 GB
EGAF50000451271 json 323 Bytes
EGAF50000451272 csv 181.9 kB
EGAF50000451273 h5 15.2 MB
EGAF50000451274 fastq.gz 173.3 MB
EGAF50000451275 fastq.gz 199.3 MB
EGAF50000451276 fastq.gz 660.8 MB
EGAF50000451277 fastq.gz 1.3 GB
EGAF50000451278 fastq.gz 163.5 MB
EGAF50000451279 fastq.gz 185.9 MB
EGAF50000451280 fastq.gz 614.2 MB
EGAF50000451281 fastq.gz 1.4 GB
EGAF50000451282 json 324 Bytes
EGAF50000451283 csv 182.0 kB
EGAF50000451284 h5 15.5 MB
EGAF50000451285 fastq.gz 220.6 MB
EGAF50000451286 fastq.gz 219.7 MB
EGAF50000451287 fastq.gz 1.3 GB
EGAF50000451288 fastq.gz 649.0 MB
EGAF50000451289 fastq.gz 197.4 MB
EGAF50000451290 fastq.gz 199.5 MB
EGAF50000451291 fastq.gz 595.3 MB
EGAF50000451292 json 324 Bytes
EGAF50000451293 fastq.gz 1.3 GB
EGAF50000451294 csv 181.6 kB
EGAF50000451295 h5 10.1 MB
EGAF50000451296 fastq.gz 123.7 MB
EGAF50000451297 fastq.gz 144.2 MB
EGAF50000451298 fastq.gz 387.3 MB
EGAF50000451299 fastq.gz 1.2 GB
EGAF50000451300 fastq.gz 112.0 MB
EGAF50000451301 fastq.gz 120.3 MB
EGAF50000451302 fastq.gz 804.4 MB
EGAF50000451303 fastq.gz 366.2 MB
EGAF50000451304 json 342 Bytes
EGAF50000451305 csv 181.6 kB
EGAF50000451306 fastq.gz 762.4 MB
330 Files (140.4 GB)