Need Help?

cfDNA sWGS BAM — NSCLC stage I–III

Plasma cfDNA sWGS for NSCLC patients (stage I–III), blood drawn pre-operatively, CHU Montpellier/LUNGDOC study. Libraries: DSP as recorded. Sequencing provider IntegraGen (2022–2024). Alignment to GRCh38 (hg38 canonical), BWA-MEM; BAMs sorted/indexed; only primary mapped reads retained (analysis pages list -F/MAPQ). Controlled access.

Request Access

User requesting access will be asked to justify how they fulfil the conditions. This dataset may further be used for research purposes only. Commercial use is not permitted.

We grant access to this dataset to make the results presented in the corresponding research paper verifiable and replicable ("Neutrophil extracellular traps have auto-catabolic activity and produce mononucleosome-associated circulating DNA" published in Genome Medicine). This dataset may further be used for research purposes only. Commercial use is not permitted. As part of your access to the dataset, you represent and warrant that you shall not attempt to: (i) identify, re-identify, or otherwise depseudonymize the data set; and (ii) you shall not further share, distribute, publish, or otherwise disseminate the data set without the author's prior written approval. When applying to download the data, you must provide the following: Your name Name and location of your university or research institute Your position (e.g. graduate student, research assistant, professor, etc...) Brief but specific description of the research project If you do not provide all of the required information, or if your proposed use is not specified, your request will be rejected.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001319 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000451596 bai 1.9 MB
EGAF50000451597 bam 1.2 GB
EGAF50000451598 bai 2.1 MB
EGAF50000451599 bam 887.3 MB
EGAF50000451600 bai 2.1 MB
EGAF50000451601 bam 851.2 MB
EGAF50000451602 bai 2.2 MB
EGAF50000451603 bam 772.5 MB
EGAF50000451604 bai 1.9 MB
EGAF50000451605 bam 854.6 MB
EGAF50000451606 bai 2.1 MB
EGAF50000451607 bam 1.2 GB
EGAF50000451608 bai 2.0 MB
EGAF50000451609 bam 1.2 GB
EGAF50000451610 bai 2.0 MB
EGAF50000451611 bam 1.2 GB
EGAF50000451612 bai 1.9 MB
EGAF50000451613 bam 773.8 MB
EGAF50000451614 bai 2.2 MB
EGAF50000451615 bam 1.0 GB
EGAF50000451616 bai 1.9 MB
EGAF50000451617 bam 1.1 GB
EGAF50000451618 bai 1.9 MB
EGAF50000451619 bam 1.0 GB
EGAF50000451620 bai 1.9 MB
EGAF50000451621 bam 1.0 GB
EGAF50000451622 bai 2.1 MB
EGAF50000451623 bam 890.9 MB
EGAF50000451624 bai 2.1 MB
EGAF50000451625 bam 781.3 MB
EGAF50000451626 bai 1.9 MB
EGAF50000451627 bam 996.9 MB
EGAF50000451628 bai 2.3 MB
EGAF50000451629 bam 734.3 MB
EGAF50000451630 bai 2.2 MB
EGAF50000451631 bam 794.6 MB
EGAF50000451632 bai 2.2 MB
EGAF50000451633 bam 766.2 MB
EGAF50000451634 bai 1.9 MB
EGAF50000451635 bam 1.1 GB
EGAF50000451636 bai 1.9 MB
EGAF50000451637 bam 1.1 GB
EGAF50000451638 bai 1.9 MB
EGAF50000451639 bam 1.0 GB
EGAF50000451640 bai 1.9 MB
EGAF50000451641 bam 1.0 GB
EGAF50000451642 bai 2.1 MB
EGAF50000451643 bam 792.0 MB
EGAF50000451644 bai 2.0 MB
EGAF50000451645 bam 865.4 MB
EGAF50000451646 bai 2.1 MB
EGAF50000451647 bam 842.6 MB
EGAF50000451648 bai 2.2 MB
EGAF50000451649 bam 706.1 MB
EGAF50000451650 bai 2.0 MB
EGAF50000451651 bam 871.5 MB
EGAF50000451652 bam 888.6 MB
EGAF50000451653 bai 2.0 MB
EGAF50000451654 bai 2.0 MB
EGAF50000451655 bam 867.1 MB
EGAF50000451656 bai 2.0 MB
EGAF50000451657 bam 923.0 MB
EGAF50000451658 bai 1.9 MB
EGAF50000451659 bam 992.1 MB
EGAF50000451660 bai 1.9 MB
EGAF50000451661 bam 869.3 MB
EGAF50000451662 bai 2.1 MB
EGAF50000451663 bam 1.0 GB
EGAF50000451664 bai 1.9 MB
EGAF50000451665 bam 1.2 GB
EGAF50000451666 bai 2.2 MB
EGAF50000451667 bam 732.9 MB
EGAF50000451668 bai 1.9 MB
EGAF50000451669 bam 947.2 MB
EGAF50000451670 bai 2.1 MB
EGAF50000451671 bam 851.6 MB
EGAF50000451672 bai 2.1 MB
EGAF50000451673 bam 1.3 GB
EGAF50000451674 bai 2.2 MB
EGAF50000451675 bam 776.8 MB
EGAF50000451676 bai 1.9 MB
EGAF50000451677 bam 986.2 MB
EGAF50000451678 bai 2.1 MB
EGAF50000451679 bam 835.5 MB
EGAF50000451680 bai 2.0 MB
EGAF50000451681 bam 895.0 MB
EGAF50000451682 bai 2.1 MB
EGAF50000451683 bam 797.9 MB
EGAF50000451684 bai 2.1 MB
EGAF50000451685 bam 838.2 MB
EGAF50000451686 bai 2.1 MB
EGAF50000451687 bam 820.4 MB
EGAF50000451688 bai 2.0 MB
EGAF50000451689 bam 900.5 MB
EGAF50000451690 bai 2.2 MB
EGAF50000451691 bam 756.9 MB
EGAF50000451692 bai 2.0 MB
EGAF50000451693 bam 911.0 MB
EGAF50000451694 bai 2.1 MB
EGAF50000451695 bam 779.9 MB
EGAF50000451696 bai 2.2 MB
EGAF50000451697 bam 747.7 MB
EGAF50000451698 bai 2.1 MB
EGAF50000451699 bam 877.1 MB
EGAF50000451700 bai 2.2 MB
EGAF50000451701 bam 781.1 MB
EGAF50000451702 bai 2.1 MB
EGAF50000451703 bam 807.9 MB
EGAF50000451704 bai 2.0 MB
EGAF50000451705 bam 854.8 MB
EGAF50000451706 bai 2.1 MB
EGAF50000451707 bam 811.7 MB
112 Files (51.2 GB)