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cfDNA sWGS BAM — Metastatic colorectal cancer

Plasma cirDNA sWGS for metastatic colorectal adenocarcinoma at diagnosis prior to systemic therapy. Libraries DSP/SSP (per sample). Sequencing by IntegraGen (2022–2024). Alignment: GRCh38 with BWA-MEM; BAMs sorted/indexed; delivered as primary mapped reads only (filters/MAPQ in analysis metadata). Controlled access

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User requesting access will be asked to justify how they fulfil the conditions. This dataset may further be used for research purposes only. Commercial use is not permitted.

We grant access to this dataset to make the results presented in the corresponding research paper verifiable and replicable ("Neutrophil extracellular traps have auto-catabolic activity and produce mononucleosome-associated circulating DNA" published in Genome Medicine). This dataset may further be used for research purposes only. Commercial use is not permitted. As part of your access to the dataset, you represent and warrant that you shall not attempt to: (i) identify, re-identify, or otherwise depseudonymize the data set; and (ii) you shall not further share, distribute, publish, or otherwise disseminate the data set without the author's prior written approval. When applying to download the data, you must provide the following: Your name Name and location of your university or research institute Your position (e.g. graduate student, research assistant, professor, etc...) Brief but specific description of the research project If you do not provide all of the required information, or if your proposed use is not specified, your request will be rejected.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001319 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000451362 bai 2.2 MB
EGAF50000451363 bai 2.2 MB
EGAF50000451364 bam 1.1 GB
EGAF50000451365 bam 1.3 GB
EGAF50000451366 bai 2.0 MB
EGAF50000451367 bai 2.3 MB
EGAF50000451368 bam 918.4 MB
EGAF50000451369 bam 1.3 GB
EGAF50000451370 bai 2.0 MB
EGAF50000451371 bai 2.2 MB
EGAF50000451372 bam 1.3 GB
EGAF50000451373 bam 1.3 GB
EGAF50000451374 bai 2.1 MB
EGAF50000451375 bai 2.3 MB
EGAF50000451376 bam 1.1 GB
EGAF50000451377 bam 912.0 MB
EGAF50000451378 bai 2.1 MB
EGAF50000451379 bam 1.4 GB
EGAF50000451380 bai 2.0 MB
EGAF50000451381 bai 2.2 MB
EGAF50000451382 bam 1.2 GB
EGAF50000451383 bai 2.2 MB
EGAF50000451384 bam 1.0 GB
EGAF50000451385 bam 1.1 GB
EGAF50000451386 bai 2.2 MB
EGAF50000451387 bai 2.4 MB
EGAF50000451388 bam 883.1 MB
EGAF50000451389 bam 1.2 GB
EGAF50000451390 bai 2.2 MB
EGAF50000451391 bam 1.1 GB
EGAF50000451565 bai 2.2 MB
EGAF50000451567 bam 1.1 GB
EGAF50000451568 bai 2.3 MB
EGAF50000451569 bam 899.1 MB
EGAF50000451570 bai 2.3 MB
EGAF50000451571 bai 2.2 MB
EGAF50000451572 bam 1.6 GB
EGAF50000451573 bam 1.4 GB
EGAF50000451574 bai 2.2 MB
EGAF50000451575 bam 1.5 GB
EGAF50000451576 bai 2.3 MB
EGAF50000451577 bam 976.8 MB
EGAF50000451578 bai 2.2 MB
EGAF50000451579 bam 1.4 GB
EGAF50000451580 bai 2.2 MB
EGAF50000451581 bam 1.4 GB
EGAF50000451582 bai 2.2 MB
EGAF50000451583 bam 1.5 GB
EGAF50000451584 bai 2.0 MB
EGAF50000451585 bam 1.2 GB
EGAF50000451586 bai 2.3 MB
EGAF50000451587 bam 1.6 GB
EGAF50000451588 bai 2.2 MB
EGAF50000451589 bam 1.4 GB
EGAF50000451590 bai 2.2 MB
EGAF50000451591 bam 1.3 GB
EGAF50000451592 bai 2.3 MB
EGAF50000451593 bam 1.6 GB
EGAF50000451594 bai 2.3 MB
EGAF50000451595 bam 1.8 GB
60 Files (37.8 GB)