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cfDNA sWGS BAM — Healthy donors

Paired-end shallow whole-genome sequencing (sWGS) of plasma cfDNA from healthy donors recruited at EFS Montpellier (France). Libraries: DSP (NEBNext Ultra II) and/or SSP (IDT/Swift Accel-NGS 1S Plus). Sequencing by IntegraGen (France, 2022–2024). Reads aligned to GRCh38 (hg38 canonical) with BWA-MEM; BAMs coordinate-sorted and indexed; submission contains primary mapped reads only (unmapped/secondary/supplementary/duplicates removed; typical filter “-F 3332”, MAPQ threshold as noted in analysis records). Each BAM/BAI pair is linked to its Sample and Experiment. Data Use: controlled access.

Request Access

User requesting access will be asked to justify how they fulfil the conditions. This dataset may further be used for research purposes only. Commercial use is not permitted.

We grant access to this dataset to make the results presented in the corresponding research paper verifiable and replicable ("Neutrophil extracellular traps have auto-catabolic activity and produce mononucleosome-associated circulating DNA" published in Genome Medicine). This dataset may further be used for research purposes only. Commercial use is not permitted. As part of your access to the dataset, you represent and warrant that you shall not attempt to: (i) identify, re-identify, or otherwise depseudonymize the data set; and (ii) you shall not further share, distribute, publish, or otherwise disseminate the data set without the author's prior written approval. When applying to download the data, you must provide the following: Your name Name and location of your university or research institute Your position (e.g. graduate student, research assistant, professor, etc...) Brief but specific description of the research project If you do not provide all of the required information, or if your proposed use is not specified, your request will be rejected.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001319 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000451312 bai 2.5 MB
EGAF50000451313 bai 2.1 MB
EGAF50000451314 bam 724.7 MB
EGAF50000451315 bai 2.2 MB
EGAF50000451316 bam 908.2 MB
EGAF50000451317 bai 2.1 MB
EGAF50000451318 bam 939.3 MB
EGAF50000451319 bam 1.0 GB
EGAF50000451320 bai 2.1 MB
EGAF50000451321 bai 2.2 MB
EGAF50000451322 bam 947.7 MB
EGAF50000451323 bam 977.1 MB
EGAF50000451324 bai 2.0 MB
EGAF50000451325 bai 2.3 MB
EGAF50000451326 bam 1.1 GB
EGAF50000451327 bam 809.3 MB
EGAF50000451328 bai 2.1 MB
EGAF50000451329 bam 902.4 MB
EGAF50000451330 bai 2.2 MB
EGAF50000451331 bam 1.1 GB
EGAF50000451332 bai 2.1 MB
EGAF50000451333 bam 942.8 MB
EGAF50000451334 bai 2.0 MB
EGAF50000451335 bam 1.0 GB
EGAF50000451336 bai 2.0 MB
EGAF50000451337 bam 1.2 GB
EGAF50000451338 bai 2.0 MB
EGAF50000451339 bam 1.2 GB
EGAF50000451340 bai 2.0 MB
EGAF50000451341 bam 1.1 GB
EGAF50000451342 bai 2.2 MB
EGAF50000451343 bam 901.8 MB
EGAF50000451344 bai 2.0 MB
EGAF50000451345 bai 2.3 MB
EGAF50000451346 bam 784.4 MB
EGAF50000451347 bam 1.2 GB
EGAF50000451348 bai 2.4 MB
EGAF50000451349 bam 764.3 MB
EGAF50000451350 bai 2.2 MB
EGAF50000451351 bai 2.2 MB
EGAF50000451352 bam 941.0 MB
EGAF50000451353 bam 888.2 MB
EGAF50000451354 bai 2.0 MB
EGAF50000451355 bai 2.3 MB
EGAF50000451356 bam 1.0 GB
EGAF50000451357 bam 781.4 MB
EGAF50000451358 bai 2.0 MB
EGAF50000451359 bai 2.2 MB
EGAF50000451360 bam 1.1 GB
EGAF50000451361 bam 909.1 MB
EGAF50000451392 bai 4.2 MB
EGAF50000451393 bam 158.9 MB
EGAF50000451394 bam 164.1 MB
EGAF50000451395 bai 4.2 MB
EGAF50000451396 bai 4.3 MB
EGAF50000451397 bam 142.1 MB
EGAF50000451398 bai 4.6 MB
EGAF50000451399 bai 4.3 MB
EGAF50000451400 bam 113.9 MB
EGAF50000451401 bai 1.9 MB
EGAF50000451402 bam 142.9 MB
EGAF50000451403 bai 2.1 MB
EGAF50000451404 bam 774.1 MB
EGAF50000451405 bam 1.0 GB
EGAF50000451406 bai 2.3 MB
EGAF50000451407 bam 394.6 MB
EGAF50000451408 bai 3.0 MB
EGAF50000451409 bam 643.3 MB
EGAF50000451410 bai 2.4 MB
EGAF50000451411 bam 617.1 MB
EGAF50000451412 bai 2.0 MB
EGAF50000451413 bai 2.1 MB
EGAF50000451414 bam 914.0 MB
EGAF50000451415 bai 2.0 MB
EGAF50000451416 bam 1.3 GB
EGAF50000451417 bam 1.3 GB
EGAF50000451418 bai 2.1 MB
EGAF50000451419 bam 1.4 GB
EGAF50000451420 bai 2.0 MB
EGAF50000451421 bam 1.3 GB
EGAF50000451422 bai 2.0 MB
EGAF50000451423 bam 1.3 GB
EGAF50000451424 bai 2.3 MB
EGAF50000451425 bam 1.0 GB
EGAF50000451426 bai 2.0 MB
EGAF50000451427 bam 1.6 GB
EGAF50000451428 bai 2.0 MB
EGAF50000451429 bam 1.0 GB
EGAF50000451430 bai 2.0 MB
EGAF50000451431 bam 1.0 GB
EGAF50000451432 bai 2.0 MB
EGAF50000451433 bai 2.0 MB
EGAF50000451434 bam 982.9 MB
EGAF50000451435 bam 1.1 GB
EGAF50000451436 bai 2.0 MB
EGAF50000451437 bam 1.1 GB
EGAF50000451438 bai 2.0 MB
EGAF50000451439 bam 1.2 GB
EGAF50000451440 bai 2.1 MB
EGAF50000451441 bam 925.0 MB
EGAF50000451442 bai 2.0 MB
EGAF50000451443 bam 1.1 GB
EGAF50000451444 bai 2.3 MB
EGAF50000451445 bam 1.5 GB
EGAF50000451446 bai 2.3 MB
EGAF50000451447 bai 2.0 MB
EGAF50000451448 bam 1.5 GB
EGAF50000451449 bam 1.1 GB
EGAF50000451450 bai 1.9 MB
EGAF50000451451 bam 1.2 GB
EGAF50000451452 bai 2.4 MB
EGAF50000451453 bai 2.0 MB
EGAF50000451454 bam 1.8 GB
EGAF50000451455 bai 2.3 MB
EGAF50000451456 bam 1.2 GB
EGAF50000451457 bai 2.1 MB
EGAF50000451458 bam 943.1 MB
EGAF50000451459 bam 1.6 GB
EGAF50000451460 bai 2.4 MB
EGAF50000451461 bam 1.1 GB
EGAF50000451462 bai 2.0 MB
EGAF50000451463 bam 1.8 GB
EGAF50000451464 bai 2.0 MB
EGAF50000451466 bam 1.2 GB
124 Files (62.1 GB)