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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Differential expression in clear cell renal cell carcinoma

To investigate the levels of gene expression in clear cell renal cell carcinoma (ccRCC), we performed an RNA-seq analysis in 786-O, A-498, UM-RC-2 clear cell renal carcinoma cell lines, as well as HK-2 normal renal epithelium cell line, cultured under normoxic (20% O2) and hypoxic (0.05% O2) conditions. Data are provided in raw fastq files and csv files with the differential expression results. Differential expression was calculated by the RNAflow pipeline (DEseq2), and log fold changes are calculated with respect to the normal cell line (HK-2), with separate results between normoxic and hypoxic datasets.

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

ICR Cancer Genomics Cell Line Data Policy

Please contact Janet Nwaoshai (janet.nwaoshai@icr.ac.uk) and Richard Houlston (richard.houlston@icr.ac.uk) for the full policy details and data access agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001324 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000452009 fastq.gz 2.0 GB
EGAF50000452010 fastq.gz 1.9 GB
EGAF50000452011 fastq.gz 2.3 GB
EGAF50000452012 fastq.gz 2.2 GB
EGAF50000452013 fastq.gz 2.3 GB
EGAF50000452014 fastq.gz 2.0 GB
EGAF50000452015 fastq.gz 2.1 GB
EGAF50000452016 fastq.gz 2.2 GB
EGAF50000452017 fastq.gz 2.2 GB
EGAF50000452018 fastq.gz 1.9 GB
EGAF50000452019 fastq.gz 2.4 GB
EGAF50000452020 fastq.gz 2.5 GB
EGAF50000452021 fastq.gz 2.2 GB
EGAF50000452022 fastq.gz 1.9 GB
EGAF50000452023 fastq.gz 2.3 GB
EGAF50000452024 fastq.gz 1.8 GB
EGAF50000452025 fastq.gz 2.5 GB
EGAF50000452026 fastq.gz 1.9 GB
EGAF50000452027 fastq.gz 2.0 GB
EGAF50000452028 fastq.gz 2.3 GB
EGAF50000452029 fastq.gz 2.6 GB
EGAF50000452030 fastq.gz 2.7 GB
EGAF50000452031 fastq.gz 2.0 GB
EGAF50000452032 fastq.gz 2.2 GB
EGAF50000452033 fastq.gz 2.1 GB
EGAF50000452034 fastq.gz 2.0 GB
EGAF50000452035 fastq.gz 2.1 GB
EGAF50000452036 fastq.gz 2.2 GB
EGAF50000452037 fastq.gz 1.9 GB
EGAF50000452038 fastq.gz 2.1 GB
EGAF50000452039 fastq.gz 2.1 GB
EGAF50000452040 fastq.gz 1.9 GB
EGAF50000452041 fastq.gz 1.8 GB
EGAF50000452042 fastq.gz 1.8 GB
EGAF50000452043 fastq.gz 2.3 GB
EGAF50000452044 fastq.gz 2.1 GB
EGAF50000452045 fastq.gz 2.3 GB
EGAF50000452046 fastq.gz 1.9 GB
EGAF50000452047 fastq.gz 2.1 GB
EGAF50000452048 fastq.gz 2.3 GB
EGAF50000452049 fastq.gz 2.4 GB
EGAF50000452050 fastq.gz 2.6 GB
EGAF50000452051 fastq.gz 2.2 GB
EGAF50000452052 fastq.gz 2.0 GB
EGAF50000452053 fastq.gz 1.9 GB
EGAF50000452054 fastq.gz 2.1 GB
EGAF50000452055 fastq.gz 2.2 GB
EGAF50000452056 fastq.gz 2.0 GB
EGAF50000452059 csv 1.2 MB
EGAF50000452089 csv 1.3 MB
EGAF50000452105 csv 1.3 MB
EGAF50000452115 csv 1.3 MB
EGAF50000452118 csv 1.3 MB
EGAF50000452132 csv 1.3 MB
54 Files (102.8 GB)