About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Investigation of 3D chromatin structure in clear cell renal cell carcinoma

In order to investigation the 3D chromatin structure in clear cell renal cell carcinoma (ccRCC), we performed ultra high-resolution chromatin capture using MNase (Micro-C) in 786-O, A-498, UM-RC-2 ccRCC cell lines, as well as HK-2 normal renal epithelium cell line, cultured under normoxic (20% O2) and hypoxic (0.05% O2) conditions. Data are provided in raw fastq and the chromatin interactions in hic format. Data were processed using the Juicer pipeline.

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

ICR Cancer Genomics Cell Line Data Policy

Please contact Janet Nwaoshai (janet.nwaoshai@icr.ac.uk) and Richard Houlston (richard.houlston@icr.ac.uk) for the full policy details and data access agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001323 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000451881 fastq.gz 16.0 GB
EGAF50000451882 fastq.gz 16.0 GB
EGAF50000451883 fastq.gz 12.6 GB
EGAF50000451884 fastq.gz 15.9 GB
EGAF50000451885 fastq.gz 20.0 GB
EGAF50000451886 fastq.gz 18.1 GB
EGAF50000451887 fastq.gz 15.1 GB
EGAF50000451888 fastq.gz 19.8 GB
EGAF50000451889 fastq.gz 14.5 GB
EGAF50000451890 fastq.gz 16.7 GB
EGAF50000451891 fastq.gz 17.9 GB
EGAF50000451892 fastq.gz 14.7 GB
EGAF50000451893 fastq.gz 16.2 GB
EGAF50000451894 fastq.gz 13.3 GB
EGAF50000451895 fastq.gz 20.8 GB
EGAF50000451896 fastq.gz 16.3 GB
EGAF50000451897 fastq.gz 16.4 GB
EGAF50000451898 fastq.gz 16.6 GB
EGAF50000451899 fastq.gz 14.2 GB
EGAF50000451900 fastq.gz 14.2 GB
EGAF50000451901 fastq.gz 15.2 GB
EGAF50000451902 fastq.gz 15.2 GB
EGAF50000451903 fastq.gz 15.4 GB
EGAF50000451904 fastq.gz 15.5 GB
EGAF50000451905 fastq.gz 17.1 GB
EGAF50000451906 fastq.gz 17.2 GB
EGAF50000451907 fastq.gz 16.5 GB
EGAF50000451908 fastq.gz 16.7 GB
EGAF50000451909 fastq.gz 16.0 GB
EGAF50000451910 fastq.gz 17.8 GB
EGAF50000451911 fastq.gz 18.0 GB
EGAF50000451912 fastq.gz 17.3 GB
EGAF50000451913 fastq.gz 17.5 GB
EGAF50000451914 fastq.gz 17.0 GB
EGAF50000451915 fastq.gz 17.2 GB
EGAF50000451916 fastq.gz 13.6 GB
EGAF50000451917 fastq.gz 13.8 GB
EGAF50000451918 fastq.gz 16.0 GB
EGAF50000451919 fastq.gz 16.1 GB
EGAF50000451920 fastq.gz 20.4 GB
EGAF50000451921 fastq.gz 19.4 GB
EGAF50000451922 fastq.gz 19.8 GB
EGAF50000451923 fastq.gz 9.4 GB
EGAF50000451924 fastq.gz 9.8 GB
EGAF50000451925 fastq.gz 13.1 GB
EGAF50000451926 fastq.gz 16.0 GB
EGAF50000451927 fastq.gz 16.3 GB
EGAF50000451928 fastq.gz 16.5 GB
EGAF50000451929 fastq.gz 17.4 GB
EGAF50000451930 fastq.gz 17.9 GB
EGAF50000451931 fastq.gz 14.8 GB
EGAF50000451932 fastq.gz 15.5 GB
EGAF50000451933 fastq.gz 14.0 GB
EGAF50000451934 fastq.gz 15.1 GB
EGAF50000451935 fastq.gz 18.6 GB
EGAF50000451936 fastq.gz 20.1 GB
EGAF50000451937 fastq.gz 15.7 GB
EGAF50000451938 fastq.gz 16.9 GB
EGAF50000451939 fastq.gz 14.1 GB
EGAF50000451940 fastq.gz 14.8 GB
EGAF50000451941 fastq.gz 14.3 GB
EGAF50000451942 fastq.gz 14.3 GB
EGAF50000451943 fastq.gz 12.9 GB
EGAF50000451944 fastq.gz 13.1 GB
EGAF50000451945 fastq.gz 14.6 GB
EGAF50000451946 fastq.gz 15.0 GB
EGAF50000451947 fastq.gz 15.0 GB
EGAF50000451948 fastq.gz 15.0 GB
EGAF50000451949 fastq.gz 12.4 GB
EGAF50000451950 fastq.gz 12.5 GB
EGAF50000451951 fastq.gz 15.5 GB
EGAF50000451952 fastq.gz 15.5 GB
EGAF50000451953 fastq.gz 15.3 GB
EGAF50000451954 fastq.gz 15.4 GB
EGAF50000451955 fastq.gz 16.1 GB
EGAF50000451956 fastq.gz 16.0 GB
EGAF50000451957 fastq.gz 16.1 GB
EGAF50000451958 fastq.gz 16.8 GB
EGAF50000451959 fastq.gz 17.0 GB
EGAF50000451960 fastq.gz 17.3 GB
EGAF50000451961 fastq.gz 17.0 GB
EGAF50000451962 fastq.gz 18.8 GB
EGAF50000451963 fastq.gz 18.9 GB
EGAF50000451964 fastq.gz 13.5 GB
EGAF50000451965 fastq.gz 13.3 GB
EGAF50000451966 fastq.gz 16.2 GB
EGAF50000451967 fastq.gz 16.2 GB
EGAF50000451968 fastq.gz 16.5 GB
EGAF50000451969 fastq.gz 16.8 GB
EGAF50000451970 fastq.gz 15.2 GB
EGAF50000451971 fastq.gz 15.3 GB
EGAF50000451972 fastq.gz 15.3 GB
EGAF50000451973 fastq.gz 15.3 GB
EGAF50000451974 fastq.gz 16.9 GB
EGAF50000451975 fastq.gz 16.9 GB
EGAF50000451976 fastq.gz 14.6 GB
EGAF50000451977 fastq.gz 14.7 GB
EGAF50000451978 fastq.gz 17.1 GB
EGAF50000451979 fastq.gz 17.2 GB
EGAF50000451980 fastq.gz 14.5 GB
EGAF50000451981 fastq.gz 14.7 GB
EGAF50000451982 fastq.gz 17.1 GB
EGAF50000451983 fastq.gz 17.4 GB
EGAF50000451984 fastq.gz 17.5 GB
EGAF50000451985 fastq.gz 17.1 GB
EGAF50000451986 fastq.gz 17.3 GB
EGAF50000451987 fastq.gz 19.8 GB
EGAF50000451988 fastq.gz 18.5 GB
EGAF50000451989 fastq.gz 18.6 GB
EGAF50000451990 fastq.gz 14.0 GB
EGAF50000451991 fastq.gz 14.2 GB
EGAF50000451992 fastq.gz 15.2 GB
EGAF50000451993 fastq.gz 15.5 GB
EGAF50000451994 fastq.gz 11.7 GB
EGAF50000451995 fastq.gz 11.6 GB
EGAF50000451996 fastq.gz 18.2 GB
EGAF50000451997 fastq.gz 13.4 GB
EGAF50000451998 fastq.gz 11.7 GB
EGAF50000451999 fastq.gz 11.8 GB
EGAF50000452000 fastq.gz 13.1 GB
EGAF50000452001 fastq.gz 13.2 GB
EGAF50000452002 fastq.gz 14.8 GB
EGAF50000452003 fastq.gz 16.3 GB
EGAF50000452004 fastq.gz 16.4 GB
EGAF50000452005 fastq.gz 17.8 GB
EGAF50000452006 fastq.gz 18.0 GB
EGAF50000452007 fastq.gz 16.9 GB
EGAF50000452008 fastq.gz 20.3 GB
EGAF50000452076 hic 12.8 GB
EGAF50000452078 hic 15.4 GB
EGAF50000452087 hic 20.1 GB
EGAF50000452092 hic 18.8 GB
EGAF50000452103 hic 13.0 GB
EGAF50000452125 hic 16.0 GB
EGAF50000452133 hic 12.8 GB
EGAF50000452134 hic 16.8 GB
136 Files (2.2 TB)