About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Investigation of chromatin accessibility in clear cell renal cell carcinoma using ATAC-seq

To identify regions of open and accessible chromatin in clear cell renal cell carcinoma (ccRCC), we performed ATAC-seq on the 786-O, A-498, UM-RC-2 ccRCC cell lines, as well as HK-2 normal renal epithelium cell line, cultured under normoxic (20% O2) and hypoxic (0.05% O2) conditions. Data are provided in raw fastq and processed narrowPeak fomats. Data were processed using the nf-core atacseq pipeline.

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

ICR Cancer Genomics Cell Line Data Policy

Please contact Janet Nwaoshai (janet.nwaoshai@icr.ac.uk) and Richard Houlston (richard.houlston@icr.ac.uk) for the full policy details and data access agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001325 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000451728 fastq.gz 6.8 GB
EGAF50000451729 fastq.gz 4.0 GB
EGAF50000451730 fastq.gz 1.6 GB
EGAF50000451731 fastq.gz 1.5 GB
EGAF50000451732 fastq.gz 6.2 GB
EGAF50000451733 fastq.gz 2.8 GB
EGAF50000451734 fastq.gz 3.4 GB
EGAF50000451735 fastq.gz 3.2 GB
EGAF50000451736 fastq.gz 8.0 GB
EGAF50000451737 fastq.gz 2.9 GB
EGAF50000451738 fastq.gz 3.3 GB
EGAF50000451739 fastq.gz 2.5 GB
EGAF50000451740 fastq.gz 2.4 GB
EGAF50000451741 fastq.gz 2.5 GB
EGAF50000451742 fastq.gz 3.1 GB
EGAF50000451743 fastq.gz 5.4 GB
EGAF50000451744 fastq.gz 2.4 GB
EGAF50000451745 fastq.gz 6.6 GB
EGAF50000451746 fastq.gz 2.7 GB
EGAF50000451747 fastq.gz 2.3 GB
EGAF50000451748 fastq.gz 3.2 GB
EGAF50000451749 fastq.gz 3.4 GB
EGAF50000451750 fastq.gz 4.9 GB
EGAF50000451751 fastq.gz 4.2 GB
EGAF50000451752 fastq.gz 3.1 GB
EGAF50000451753 fastq.gz 3.6 GB
EGAF50000451754 fastq.gz 3.7 GB
EGAF50000451755 fastq.gz 7.3 GB
EGAF50000451756 fastq.gz 4.8 GB
EGAF50000451757 fastq.gz 6.7 GB
EGAF50000451758 fastq.gz 2.6 GB
EGAF50000451759 fastq.gz 4.5 GB
EGAF50000452066 narrowPeak 13.4 MB
EGAF50000452069 narrowPeak 9.7 MB
EGAF50000452086 narrowPeak 10.4 MB
EGAF50000452090 narrowPeak 8.4 MB
EGAF50000452101 narrowPeak 9.9 MB
EGAF50000452107 narrowPeak 10.3 MB
EGAF50000452112 narrowPeak 10.5 MB
EGAF50000452138 narrowPeak 9.7 MB
40 Files (125.5 GB)