About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Epigenetic analysis of clear cell renal cell carcinoma using ChIP-seq

To investigate the epigenetic landscape of clear cell renal cell carcinoma (ccRCC), we performed ChIP-seq data for the CTCF, H3K4me1, H3K4me3, H3K27ac, H3K27me3, H3K36me3, and HIF1A marks in the 786-O, A-498, UM-RC-2 ccRCC cell lines, as well as the HK-2 normal renal epithelium cell line, cultured under normoxic (20% O2) and hypoxic (0.05% O2) conditions. Data are provided in raw fastq and narrowPeak formats. Data were processed using the nf-core chipseq pipeline.

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DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000022
version: 2021-02-23

geographical restriction

This data use modifier indicates that use is limited to within a specific geographic region.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

ICR Cancer Genomics Cell Line Data Policy

Please contact Janet Nwaoshai (janet.nwaoshai@icr.ac.uk) and Richard Houlston (richard.houlston@icr.ac.uk) for the full policy details and data access agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001322 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000451760 fastq.gz 3.7 GB
EGAF50000451761 fastq.gz 3.1 GB
EGAF50000451762 fastq.gz 4.4 GB
EGAF50000451763 fastq.gz 2.7 GB
EGAF50000451764 fastq.gz 4.5 GB
EGAF50000451765 fastq.gz 2.1 GB
EGAF50000451766 fastq.gz 3.7 GB
EGAF50000451767 fastq.gz 3.1 GB
EGAF50000451768 fastq.gz 3.0 GB
EGAF50000451769 fastq.gz 3.9 GB
EGAF50000451770 fastq.gz 3.7 GB
EGAF50000451771 fastq.gz 2.7 GB
EGAF50000451772 fastq.gz 3.0 GB
EGAF50000451773 fastq.gz 4.3 GB
EGAF50000451774 fastq.gz 3.1 GB
EGAF50000451775 fastq.gz 4.3 GB
EGAF50000451776 fastq.gz 4.8 GB
EGAF50000451777 fastq.gz 2.9 GB
EGAF50000451778 fastq.gz 3.4 GB
EGAF50000451779 fastq.gz 3.7 GB
EGAF50000451780 fastq.gz 3.8 GB
EGAF50000451781 fastq.gz 3.9 GB
EGAF50000451782 fastq.gz 4.2 GB
EGAF50000451783 fastq.gz 5.5 GB
EGAF50000451784 fastq.gz 3.0 GB
EGAF50000451785 fastq.gz 3.0 GB
EGAF50000451786 fastq.gz 5.4 GB
EGAF50000451787 fastq.gz 10.7 GB
EGAF50000451788 fastq.gz 3.7 GB
EGAF50000451789 fastq.gz 2.8 GB
EGAF50000451790 fastq.gz 3.6 GB
EGAF50000451791 fastq.gz 5.6 GB
EGAF50000451792 fastq.gz 4.9 GB
EGAF50000451793 fastq.gz 3.6 GB
EGAF50000451794 fastq.gz 5.4 GB
EGAF50000451795 fastq.gz 3.5 GB
EGAF50000451796 fastq.gz 4.0 GB
EGAF50000451797 fastq.gz 3.3 GB
EGAF50000451798 fastq.gz 4.2 GB
EGAF50000451799 fastq.gz 3.2 GB
EGAF50000451800 fastq.gz 4.9 GB
EGAF50000451801 fastq.gz 2.9 GB
EGAF50000451802 fastq.gz 4.8 GB
EGAF50000451803 fastq.gz 3.6 GB
EGAF50000451804 fastq.gz 3.5 GB
EGAF50000451805 fastq.gz 4.0 GB
EGAF50000451806 fastq.gz 3.7 GB
EGAF50000451807 fastq.gz 3.2 GB
EGAF50000451808 fastq.gz 3.9 GB
EGAF50000451809 fastq.gz 3.3 GB
EGAF50000451810 fastq.gz 6.0 GB
EGAF50000451811 fastq.gz 4.9 GB
EGAF50000451812 fastq.gz 11.1 GB
EGAF50000451813 fastq.gz 3.1 GB
EGAF50000451814 fastq.gz 3.8 GB
EGAF50000451815 fastq.gz 4.2 GB
EGAF50000451816 fastq.gz 4.3 GB
EGAF50000451817 fastq.gz 3.1 GB
EGAF50000451818 fastq.gz 5.0 GB
EGAF50000451819 fastq.gz 5.6 GB
EGAF50000451820 fastq.gz 3.6 GB
EGAF50000451821 fastq.gz 3.9 GB
EGAF50000451822 fastq.gz 6.5 GB
EGAF50000451823 fastq.gz 3.1 GB
EGAF50000451824 fastq.gz 3.0 GB
EGAF50000451825 fastq.gz 3.2 GB
EGAF50000451826 fastq.gz 4.7 GB
EGAF50000451827 fastq.gz 6.7 GB
EGAF50000451828 fastq.gz 4.0 GB
EGAF50000451829 fastq.gz 6.2 GB
EGAF50000451830 fastq.gz 9.5 GB
EGAF50000451831 fastq.gz 4.2 GB
EGAF50000451832 fastq.gz 8.8 GB
EGAF50000451833 fastq.gz 3.1 GB
EGAF50000451834 fastq.gz 2.9 GB
EGAF50000451835 fastq.gz 4.6 GB
EGAF50000451836 fastq.gz 3.8 GB
EGAF50000451837 fastq.gz 6.4 GB
EGAF50000451838 fastq.gz 4.7 GB
EGAF50000451839 fastq.gz 6.8 GB
EGAF50000451840 fastq.gz 3.9 GB
EGAF50000451841 fastq.gz 2.5 GB
EGAF50000451842 fastq.gz 3.9 GB
EGAF50000451843 fastq.gz 5.1 GB
EGAF50000451844 fastq.gz 2.0 GB
EGAF50000451845 fastq.gz 3.2 GB
EGAF50000451846 fastq.gz 5.0 GB
EGAF50000451847 fastq.gz 3.0 GB
EGAF50000451848 fastq.gz 3.1 GB
EGAF50000451849 fastq.gz 4.3 GB
EGAF50000451850 fastq.gz 5.4 GB
EGAF50000451851 fastq.gz 2.5 GB
EGAF50000451852 fastq.gz 3.2 GB
EGAF50000451853 fastq.gz 2.6 GB
EGAF50000451854 fastq.gz 3.5 GB
EGAF50000451855 fastq.gz 3.4 GB
EGAF50000451856 fastq.gz 5.9 GB
EGAF50000451857 fastq.gz 5.8 GB
EGAF50000451858 fastq.gz 4.9 GB
EGAF50000451859 fastq.gz 5.5 GB
EGAF50000451860 fastq.gz 4.4 GB
EGAF50000451861 fastq.gz 6.8 GB
EGAF50000451862 fastq.gz 3.6 GB
EGAF50000451863 fastq.gz 4.6 GB
EGAF50000451864 fastq.gz 5.2 GB
EGAF50000451865 fastq.gz 3.6 GB
EGAF50000451866 fastq.gz 2.6 GB
EGAF50000451867 fastq.gz 2.9 GB
EGAF50000451868 fastq.gz 4.0 GB
EGAF50000451869 fastq.gz 5.3 GB
EGAF50000451870 fastq.gz 4.6 GB
EGAF50000451871 fastq.gz 3.1 GB
EGAF50000451872 fastq.gz 4.7 GB
EGAF50000451873 fastq.gz 3.6 GB
EGAF50000451874 fastq.gz 5.2 GB
EGAF50000451875 fastq.gz 3.8 GB
EGAF50000451876 fastq.gz 5.5 GB
EGAF50000451877 fastq.gz 5.8 GB
EGAF50000451878 fastq.gz 2.9 GB
EGAF50000451879 fastq.gz 2.7 GB
EGAF50000451880 fastq.gz 2.1 GB
EGAF50000452057 narrowPeak 375.1 kB
EGAF50000452058 narrowPeak 4.8 MB
EGAF50000452060 narrowPeak 4.9 MB
EGAF50000452061 narrowPeak 10.2 MB
EGAF50000452062 narrowPeak 15.2 kB
EGAF50000452063 narrowPeak 8.7 MB
EGAF50000452064 narrowPeak 9.0 MB
EGAF50000452065 narrowPeak 149.2 kB
EGAF50000452067 narrowPeak 12.5 MB
EGAF50000452068 narrowPeak 5.6 MB
EGAF50000452070 narrowPeak 9.9 MB
EGAF50000452071 narrowPeak 6.4 MB
EGAF50000452072 narrowPeak 5.0 MB
EGAF50000452073 narrowPeak 164.8 kB
EGAF50000452074 narrowPeak 5.9 MB
EGAF50000452075 narrowPeak 56.0 kB
EGAF50000452077 narrowPeak 8.7 MB
EGAF50000452079 narrowPeak 5.6 MB
EGAF50000452080 narrowPeak 4.7 MB
EGAF50000452081 narrowPeak 8.4 MB
EGAF50000452082 narrowPeak 28.1 kB
EGAF50000452083 narrowPeak 5.1 MB
EGAF50000452084 narrowPeak 121.8 kB
EGAF50000452085 narrowPeak 12.6 MB
EGAF50000452088 narrowPeak 102.8 kB
EGAF50000452091 narrowPeak 7.9 MB
EGAF50000452093 narrowPeak 6.2 MB
EGAF50000452094 narrowPeak 7.1 MB
EGAF50000452095 narrowPeak 6.6 MB
EGAF50000452096 narrowPeak 8.0 MB
EGAF50000452097 narrowPeak 9.4 MB
EGAF50000452098 narrowPeak 7.1 MB
EGAF50000452099 narrowPeak 8.3 MB
EGAF50000452100 narrowPeak 6.3 MB
EGAF50000452102 narrowPeak 11.0 MB
EGAF50000452104 narrowPeak 5.6 MB
EGAF50000452106 narrowPeak 5.1 MB
EGAF50000452108 narrowPeak 346.7 kB
EGAF50000452109 narrowPeak 18.8 kB
EGAF50000452110 narrowPeak 20.5 kB
EGAF50000452111 narrowPeak 45.0 kB
EGAF50000452113 narrowPeak 6.0 MB
EGAF50000452114 narrowPeak 15.9 MB
EGAF50000452116 narrowPeak 4.9 MB
EGAF50000452117 narrowPeak 7.0 MB
EGAF50000452119 narrowPeak 34.7 MB
EGAF50000452120 narrowPeak 7.2 MB
EGAF50000452121 narrowPeak 12.4 MB
EGAF50000452122 narrowPeak 66.7 kB
EGAF50000452123 narrowPeak 6.5 MB
EGAF50000452124 narrowPeak 8.6 MB
EGAF50000452126 narrowPeak 6.4 MB
EGAF50000452127 narrowPeak 321.5 kB
EGAF50000452128 narrowPeak 116.2 kB
EGAF50000452129 narrowPeak 5.2 MB
EGAF50000452130 narrowPeak 16.9 MB
EGAF50000452131 narrowPeak 6.5 MB
EGAF50000452135 narrowPeak 5.8 MB
EGAF50000452136 narrowPeak 13.1 MB
EGAF50000452137 narrowPeak 182.0 kB
181 Files (512.1 GB)