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Clinical Utility of BRCA Research by Inocras, CMC and SMC (CUBRICS)

This dataset consists of transcriptome data available for most cases of the whole-genome sequences from 1,364 Korean breast cancers

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) provided by Graduate School of Medical Science and Engineering in Korea Advanced Institute of Science and Technology (KAIST-GSMSE) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions.

These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) provided by Graduate School of Medical Science and Engineering in Korea Advanced Institute of Science and Technology (KAIST-GSMSE) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorized Personnel: The individuals at the User Institution to whom KAIST-GSMSE grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access dataset(s) to which the User Institution has requested access. Data Producers: KAIST-GSMSE and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify KAIST-GSMSE within 30 days of any changes or departures of Authorized Personnel. 13. The User Institution will notify KAIST-GSMSE prior to any significant changes to the protocol for the Project. 14. The User Institution will notify KAIST-GSMSE promptly when it becomes aware of a breach of the terms or conditions of this agreement. 15. Either party may terminate this agreement by written notice to the other party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than KAIST-GSMSE. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will procure that the Authorized Personnel comply with the terms of this agreement. 18. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Republic of Korea (South Korea) and shall be subject to the exclusive jurisdiction of the South Korean courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001377 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008948766 bam 6.2 GB
EGAF00008948768 bam 4.4 GB
EGAF00008948770 bam 6.7 GB
EGAF00008948771 bam 5.3 GB
EGAF00008948773 bam 4.4 GB
EGAF00008948774 bam 4.3 GB
EGAF00008948785 bam 5.2 GB
EGAF00008948791 bam 6.1 GB
EGAF00008948795 bam 7.4 GB
EGAF00008948797 bam 3.8 GB
EGAF00008948798 bam 5.2 GB
EGAF00008948799 bam 5.7 GB
EGAF00008948802 bam 3.7 GB
EGAF00008948803 bam 9.6 GB
EGAF00008948806 bam 6.5 GB
EGAF00008948808 bam 5.8 GB
EGAF00008948809 bam 5.6 GB
EGAF00008948818 bam 5.0 GB
EGAF00008948821 bam 6.4 GB
EGAF00008948822 bam 5.9 GB
EGAF00008948828 bam 4.8 GB
EGAF00008948829 bam 5.6 GB
EGAF00008948830 bam 5.3 GB
EGAF00008948831 bam 5.5 GB
EGAF00008948837 bam 6.3 GB
EGAF00008948840 bam 5.3 GB
EGAF00008948844 bam 3.7 GB
EGAF00008948849 bam 4.1 GB
EGAF00008948850 bam 6.0 GB
EGAF00008948853 bam 5.7 GB
EGAF00008948856 bam 7.4 GB
EGAF00008948858 bam 5.9 GB
EGAF00008948861 bam 5.7 GB
EGAF00008948864 bam 6.0 GB
EGAF00008948865 bam 5.0 GB
EGAF00008948866 bam 6.1 GB
EGAF00008948870 bam 5.6 GB
EGAF00008948871 bam 5.0 GB
EGAF00008948875 bam 5.5 GB
EGAF00008948877 bam 5.4 GB
EGAF00008948883 bam 5.9 GB
EGAF00008948886 bam 6.0 GB
EGAF00008949389 bam 6.8 GB
EGAF00008949404 bam 4.5 GB
EGAF00008949414 bam 5.7 GB
EGAF00008949434 bam 6.0 GB
EGAF00008949435 bam 6.8 GB
EGAF00008949439 bam 5.3 GB
EGAF00008949449 bam 6.5 GB
EGAF00008949452 bam 6.7 GB
EGAF00008949455 bam 5.2 GB
EGAF00008949456 bam 4.8 GB
EGAF00008949463 bam 5.8 GB
EGAF00008949494 bam 4.0 GB
EGAF00008949508 bam 4.1 GB
EGAF00008949528 bam 5.4 GB
EGAF00008949531 bam 7.3 GB
EGAF00008949537 bam 5.2 GB
EGAF00008949542 bam 5.5 GB
EGAF00008949566 bam 4.2 GB
EGAF00008949569 bam 5.4 GB
EGAF00008949576 bam 4.7 GB
EGAF00008949578 bam 3.9 GB
EGAF00008949581 bam 3.4 GB
EGAF00008949586 bam 5.0 GB
EGAF00008949597 bam 5.1 GB
EGAF00008949603 bam 7.1 GB
EGAF00008949606 bam 6.8 GB
EGAF00008949617 bam 7.1 GB
EGAF00008949618 bam 4.3 GB
EGAF00008949619 bam 5.2 GB
EGAF00008949626 bam 6.3 GB
EGAF00008949629 bam 5.2 GB
EGAF00008949634 bam 4.4 GB
EGAF00008949646 bam 4.5 GB
EGAF00008949650 bam 4.3 GB
EGAF00008949652 bam 6.4 GB
EGAF00008949681 bam 6.6 GB
EGAF00008949684 bam 5.5 GB
EGAF00008949686 bam 6.1 GB
EGAF00008949697 bam 5.4 GB
EGAF00008949698 bam 4.6 GB
EGAF00008949700 bam 7.8 GB
EGAF00008949706 bam 7.2 GB
EGAF00008949707 bam 4.7 GB
EGAF00008949710 bam 4.8 GB
EGAF00008949715 bam 8.0 GB
EGAF00008949716 bam 4.3 GB
EGAF00008949723 bam 5.5 GB
EGAF00008949736 bam 6.6 GB
EGAF00008949744 bam 7.9 GB
EGAF00008949760 bam 6.1 GB
EGAF00008949774 bam 7.7 GB
EGAF00008949776 bam 6.3 GB
EGAF00008949780 bam 6.0 GB
EGAF00008949781 bam 5.4 GB
EGAF00008949784 bam 6.5 GB
EGAF00008949786 bam 5.9 GB
EGAF00008949787 bam 3.9 GB
EGAF00008949788 bam 6.0 GB
EGAF00008949790 bam 7.2 GB
EGAF00008949792 bam 6.7 GB
EGAF00008949793 bam 7.7 GB
EGAF00008949794 bam 4.2 GB
EGAF00008949797 bam 6.7 GB
EGAF00008949799 bam 5.5 GB
EGAF00008949803 bam 6.4 GB
EGAF00008949805 bam 5.4 GB
EGAF00008949810 bam 5.2 GB
EGAF00008949811 bam 5.9 GB
EGAF00008949812 bam 5.5 GB
EGAF00008949819 bam 5.2 GB
EGAF00008949823 bam 4.7 GB
EGAF00008949827 bam 5.1 GB
EGAF00008949831 bam 5.6 GB
EGAF00008949838 bam 7.5 GB
EGAF00008949839 bam 5.2 GB
EGAF00008949845 bam 6.3 GB
EGAF00008949846 bam 6.0 GB
EGAF00008949847 bam 4.8 GB
EGAF00008949850 bam 7.3 GB
EGAF00008949851 bam 4.7 GB
EGAF00008949853 bam 5.4 GB
EGAF00008949856 bam 6.5 GB
EGAF00008949857 bam 7.4 GB
EGAF00008949863 bam 7.7 GB
EGAF00008949872 bam 5.8 GB
EGAF00008949874 bam 7.2 GB
EGAF00008949879 bam 5.4 GB
EGAF00008949880 bam 6.6 GB
EGAF00008949883 bam 6.9 GB
EGAF00008949884 bam 4.7 GB
EGAF00008949885 bam 5.5 GB
EGAF00008949888 bam 5.8 GB
EGAF00008949889 bam 5.3 GB
EGAF00008949891 bam 6.6 GB
EGAF00008949895 bam 6.6 GB
EGAF00008949896 bam 5.3 GB
EGAF00008949897 bam 6.2 GB
EGAF00008949898 bam 4.2 GB
EGAF00008949899 bam 6.2 GB
EGAF00008949910 bam 6.8 GB
EGAF00008949912 bam 4.6 GB
EGAF00008949913 bam 6.1 GB
EGAF00008949916 bam 3.9 GB
EGAF00008949924 bam 5.1 GB
EGAF00008949937 bam 4.7 GB
EGAF00008949942 bam 4.1 GB
EGAF00008949947 bam 8.2 GB
EGAF00008949959 bam 5.2 GB
EGAF00008949964 bam 4.9 GB
EGAF00008949967 bam 4.5 GB
EGAF00008949987 bam 5.3 GB
EGAF00008949990 bam 6.5 GB
EGAF00008949991 bam 3.6 GB
EGAF00008949992 bam 5.9 GB
EGAF00008949993 bam 4.2 GB
EGAF00008949999 bam 8.7 GB
EGAF00008950004 bam 4.3 GB
EGAF00008950011 bam 7.1 GB
EGAF00008950021 bam 5.2 GB
EGAF00008950027 bam 9.8 GB
EGAF00008950034 bam 5.6 GB
EGAF00008950035 bam 6.6 GB
EGAF00008950037 bam 6.5 GB
EGAF00008950045 bam 8.7 GB
EGAF00008950047 bam 6.9 GB
EGAF00008950055 bam 10.4 GB
EGAF00008950056 bam 4.1 GB
EGAF00008950063 bam 6.7 GB
EGAF00008950065 bam 4.1 GB
EGAF00008950067 bam 8.9 GB
EGAF00008950069 bam 6.6 GB
EGAF00008950072 bam 4.5 GB
EGAF00008950075 bam 4.0 GB
EGAF00008950080 bam 5.2 GB
EGAF00008950081 bam 4.3 GB
EGAF00008950085 bam 6.2 GB
EGAF00008950090 bam 4.7 GB
EGAF00008950108 bam 7.2 GB
EGAF00008950118 bam 11.2 GB
EGAF00008950122 bam 7.3 GB
EGAF00008950124 bam 6.6 GB
EGAF00008950128 bam 6.0 GB
EGAF00008950133 bam 5.2 GB
EGAF00008950136 bam 4.4 GB
EGAF00008950138 bam 5.5 GB
EGAF00008950140 bam 4.5 GB
EGAF00008950142 bam 8.1 GB
EGAF00008950143 bam 4.4 GB
EGAF00008950146 bam 4.6 GB
EGAF00008950149 bam 4.9 GB
EGAF00008950152 bam 4.2 GB
EGAF00008950155 bam 4.5 GB
EGAF00008950159 bam 4.2 GB
EGAF00008950160 bam 7.2 GB
EGAF00008950161 bam 8.1 GB
EGAF00008950163 bam 4.4 GB
EGAF00008950168 bam 5.1 GB
EGAF00008950182 bam 8.0 GB
EGAF00008950183 bam 5.8 GB
EGAF00008950187 bam 5.3 GB
EGAF00008950197 bam 5.4 GB
EGAF00008950198 bam 6.6 GB
EGAF00008950202 bam 4.6 GB
EGAF00008950207 bam 2.8 GB
EGAF00008950209 bam 6.6 GB
EGAF00008950213 bam 5.9 GB
EGAF00008950216 bam 6.0 GB
EGAF00008950217 bam 6.9 GB
EGAF00008950220 bam 6.3 GB
EGAF00008950222 bam 4.9 GB
EGAF00008950225 bam 5.5 GB
EGAF00008950226 bam 6.7 GB
EGAF00008950229 bam 3.9 GB
EGAF00008950231 bam 7.0 GB
EGAF00008950233 bam 9.0 GB
EGAF00008950243 bam 6.6 GB
EGAF00008950244 bam 5.9 GB
EGAF00008950245 bam 5.2 GB
EGAF00008950249 bam 3.8 GB
EGAF00008950250 bam 5.9 GB
EGAF00008950254 bam 6.7 GB
EGAF00008950257 bam 6.1 GB
EGAF00008950259 bam 5.1 GB
EGAF00008950261 bam 4.8 GB
EGAF00008950262 bam 5.4 GB
EGAF00008950265 bam 5.9 GB
EGAF00008950270 bam 6.7 GB
EGAF00008950272 bam 6.2 GB
EGAF00008950711 bam 5.7 GB
EGAF00008950712 bam 6.9 GB
EGAF00008950713 bam 7.4 GB
EGAF00008950715 bam 7.7 GB
EGAF00008950720 bam 7.2 GB
EGAF00008950721 bam 5.9 GB
236 Files (1.4 TB)