About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS data of pediatric T-ALL acute lymphoblastic leukemia (set1)

The dataset includes FASTQ and BAM files from diagnostic and matched remission (control) samples of one T-ALL patient (ALLT-317). Relapsed (BM ALLT-317L and Tonsil ALLT-3107L) sample files are in dataset set2 of this submission. Sequencing library was made using PCR free-based WGS library preparation (PCR-), using TruSeq DNA PCRfree library preparation kit v1 (PE150). Both diagnostic (60x) and remission (30x) samples were sequenced using HiSeq X.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001387 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000486324 fastq.gz 36.8 GB
EGAF50000486325 fastq.gz 73.5 GB
EGAF50000486348 fastq.gz 40.3 GB
EGAF50000486349 fastq.gz 68.6 GB
EGAF50000486378 bam 130.4 GB
EGAF50000486379 bai 9.5 MB
EGAF50000486380 bam 70.5 GB
EGAF50000486381 bai 9.4 MB
8 Files (420.0 GB)