WGS data of paediatric T-ALL acute lymphoblastic leukemia (set2)
The dataset includes FASTQ and CRAM files from diagnostic and matched remission (control) samples of one T-ALL patient (ALLK-118), and relapse (from BM and tonsil) and matched remission (control) samples of another T-ALL sample (ALLT-317, tonsil relapse ALLT-3107L). Diagnostic sample of ALLT-317 in the first dataset in this submission. Sequencing library was made using PCR free-based WGS library preparation (PCR-), using NEBNext® Ultra™ II DNA Library Prep Kit (Cat No. E7645). Both diagnostic/relapse (90x) and remission (30x) samples were sequenced using Illumina Novaseq 6000.
- 31/10/2025
- 5 samples
- DAC: EGAC00001001551
- Technologies: Illumina HiSeq X, Illumina NovaSeq 6000
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001387 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF50000486316 | fq.gz | 25.6 GB |
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| EGAF50000486317 | fq.gz | 24.8 GB |
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| EGAF50000486318 | fq.gz | 26.3 GB |
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| EGAF50000486319 | fq.gz | 25.1 GB |
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| EGAF50000486320 | fq.gz | 24.5 GB |
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| EGAF50000486344 | crai | 864.1 kB |
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| EGAF50000486345 | fq.gz | 26.3 GB |
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| EGAF50000486346 | fq.gz | 28.3 GB |
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| EGAF50000486347 | fq.gz | 24.5 GB |
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| EGAF50000486355 | cram | 10.4 GB |
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| EGAF50000486356 | crai | 2.5 MB |
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| EGAF50000486357 | cram | 8.3 GB |
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| EGAF50000486358 | crai | 854.8 kB |
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| EGAF50000486359 | cram | 27.2 GB |
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| EGAF50000486382 | cram | 22.3 GB |
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| EGAF50000486383 | crai | 2.4 MB |
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| EGAF50000486384 | cram | 27.2 GB |
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| EGAF50000486385 | crai | 2.4 MB |
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| EGAF50000486386 | fq.gz | 907.6 MB |
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| EGAF50000486387 | fq.gz | 8.3 GB |
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| EGAF50000486388 | fq.gz | 15.1 GB |
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| EGAF50000486389 | fq.gz | 15.9 GB |
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| EGAF50000486390 | fq.gz | 16.3 GB |
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| EGAF50000486391 | fq.gz | 3.1 GB |
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| EGAF50000486392 | fq.gz | 16.9 GB |
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| EGAF50000486393 | fq.gz | 899.6 MB |
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| EGAF50000486394 | fq.gz | 8.3 GB |
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| EGAF50000486395 | fq.gz | 3.1 GB |
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| EGAF50000486396 | fq.gz | 16.6 GB |
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| EGAF50000486397 | fq.gz | 15.3 GB |
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| EGAF50000486402 | fq.gz | 25.6 GB |
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| EGAF50000486403 | fq.gz | 27.3 GB |
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| EGAF50000486404 | fq.gz | 26.1 GB |
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| EGAF50000486405 | fq.gz | 24.0 GB |
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| EGAF50000486406 | fq.gz | 26.2 GB |
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| EGAF50000486407 | fq.gz | 23.8 GB |
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| EGAF50000486408 | fq.gz | 26.2 GB |
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| EGAF50000486409 | fq.gz | 22.9 GB |
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| 38 Files (623.7 GB) | ||||