WGS data of pediatric T-ALL acute lymphoblastic leukemia (set3)
The dataset includes FASTQ and CRAM files from diagnostic and matched remission (control) samples of two T-ALL patient (ALLK-126, ALLT-503). ALLT-503 sample has two diagnostic samples one extracted from the BM (ALLT-503D) and from the lymph node (ALLT-503lympD). Sequencing library was made using PCR free-based WGS library preparation (PCR-), using Novogene NGS DNA Library Prep Set (Cat No. PT004). Both diagnostic/relapse (90x) and remission (30x) samples were sequenced using Illumina NovaseqX Plus.
- 31/10/2025
- 5 samples
- DAC: EGAC00001001551
- Technologies: Illumina NovaSeq 6000, Illumina NovaSeq X Plus
Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital
Data will be shared if the proposed project falls within the patient/caretaker consent
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001387 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000486321 | cram | 6.3 GB |
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| EGAF50000486322 | cram | 24.9 GB |
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| EGAF50000486323 | cram | 7.8 GB |
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| EGAF50000486326 | fq.gz | 12.0 GB |
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| EGAF50000486327 | fq.gz | 10.4 GB |
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| EGAF50000486328 | fq.gz | 10.3 GB |
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| EGAF50000486329 | fq.gz | 12.2 GB |
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| EGAF50000486330 | fq.gz | 12.6 GB |
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| EGAF50000486331 | fq.gz | 12.7 GB |
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| EGAF50000486332 | fq.gz | 11.3 GB |
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| EGAF50000486333 | fq.gz | 11.4 GB |
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| EGAF50000486334 | crai | 2.3 MB |
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| EGAF50000486335 | cram | 28.1 GB |
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| EGAF50000486336 | crai | 2.4 MB |
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| EGAF50000486337 | crai | 787.5 kB |
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| EGAF50000486338 | crai | 758.3 kB |
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| EGAF50000486339 | cram | 26.1 GB |
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| EGAF50000486340 | crai | 2.5 MB |
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| EGAF50000486341 | fq.gz | 16.5 GB |
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| EGAF50000486342 | fq.gz | 16.7 GB |
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| EGAF50000486343 | fq.gz | 16.8 GB |
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| EGAF50000486350 | fq.gz | 14.3 GB |
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| EGAF50000486351 | fq.gz | 14.1 GB |
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| EGAF50000486352 | fq.gz | 4.7 GB |
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| EGAF50000486353 | fq.gz | 4.7 GB |
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| EGAF50000486354 | fq.gz | 12.4 GB |
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| EGAF50000486360 | fq.gz | 11.2 GB |
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| EGAF50000486361 | fq.gz | 21.0 GB |
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| EGAF50000486362 | fq.gz | 11.3 GB |
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| EGAF50000486363 | fq.gz | 11.9 GB |
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| EGAF50000486364 | fq.gz | 9.3 GB |
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| EGAF50000486365 | fq.gz | 9.2 GB |
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| EGAF50000486366 | fq.gz | 11.7 GB |
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| EGAF50000486367 | fq.gz | 11.8 GB |
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| EGAF50000486368 | fq.gz | 11.9 GB |
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| EGAF50000486369 | fq.gz | 20.8 GB |
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| EGAF50000486370 | fq.gz | 12.5 GB |
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| EGAF50000486371 | fq.gz | 12.7 GB |
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| EGAF50000486372 | fq.gz | 12.0 GB |
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| EGAF50000486373 | fq.gz | 17.8 GB |
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| EGAF50000486374 | fq.gz | 11.6 GB |
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| EGAF50000486375 | fq.gz | 8.6 GB |
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| EGAF50000486376 | fq.gz | 8.5 GB |
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| EGAF50000486377 | fq.gz | 17.6 GB |
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| EGAF50000486398 | fq.gz | 12.4 GB |
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| EGAF50000486399 | fq.gz | 16.4 GB |
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| EGAF50000486400 | fq.gz | 9.6 GB |
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| EGAF50000486401 | fq.gz | 9.5 GB |
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| 48 Files (565.7 GB) | ||||