About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS

A genome-wide approach based on next generation sequencing (NGS) is performed on trios ( Patient+ Father + Mother) with SAID in order to identify known and new gene variants associated with certain forms of the disease. Whole-genome sequencing (WGS) was performed on frozen PBMCs. DNA was extracted using Chemagic Prime ( Perkin Elmer) and quantified with nanodrop. The raw sequencing data is generated on the Novaseq 6000 using an S4 flowcell, with a sequencing depth of ~30X

Request Access

ImmunAID Data Access Policy

The policy covers: The conditions for accessing and using the ImmunAID Cohort data (the “Resources”); The requirements for submission and evaluation of Specific Research Projects (SRP); The rules regarding intellectual property and publication of results. This policy applies to any research team, academic or industrial, wishing to access the data. A detailed Charter describing all operational aspects of the Cohort, including its governance, is available upon request. 2. Eligibility and Access Conditions Access is open to: Public or private academic institutions with a research mandate; Non-profit organisations with a relevant scientific focus; Industry partners with established research capacity. Any team requesting access must submit a formal application. This application must include: A clear scientific rationale for the proposed study; The primary and secondary research objectives; A description of the data requested and its intended use; Information on the requesting institution and team members; Compliance measures regarding data protection and ethical use; A description of the funding source(s), if applicable. All requests are reviewed by the ImmunAID Cohort Steering Committee (SC), composed of clinical and scientific experts, who assess: Scientific quality and methodological robustness; Feasibility and originality; Ethical soundness; Overlap with existing or planned projects; Justification of data needs. The External Advisory Board (EAB), composed of independent experts, may be consulted to support the scientific and ethical evaluation. 3. Permitted Data Uses Data from the ImmunAID Cohort may be used only for non-commercial research purposes. Use of the data must be consistent with the objectives described in the approved application. Any significant change in the research purpose requires re-evaluation by the SC. 4. Prohibited Uses Data may not be used for commercial exploitation or product development without prior written agreement. Re-identification of participants is strictly prohibited. Sharing of data with third parties not listed in the approved application is not allowed. Use of data for research unrelated to SAIDs or outside the approved scope is forbidden. 5. Data Handling and Security Access is granted only if the requesting institution can guarantee: Secure data storage and processing environments; Compliance with GDPR and national regulations; Controlled access by authorised personnel only; Proper data traceability and logging. Institutions must designate a Data Protection Officer or equivalent to oversee compliance. 6. Results, Publications and Intellectual Property All results derived from the ImmunAID data must be reported to the Cohort’s Sponsor (Inserm) prior to publication. Publications must acknowledge the ImmunAID project and the contribution of the Cohort. Intellectual property generated through data use will follow specific agreements, depending on the involvement of the ImmunAID Partners and the nature of the research. 7. Access Oversight and Duration Access is time-limited and granted for the duration specified in the approved project. Renewals must be requested and justified before expiry. The Steering Committee reserves the right to audit or revoke access in case of non-compliance. 8. Contact Information and Application Submission Applications for access must be submitted via email to: immunaid2024@gmail.com Each application is acknowledged upon receipt, and a decision is typically communicated within eight weeks of submission of a complete file.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001393 Population Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000491205 fastq.gz 17.7 GB
EGAF50000491206 fastq.gz 19.8 GB
EGAF50000491207 fastq.gz 24.5 GB
EGAF50000491208 fastq.gz 27.0 GB
EGAF50000491209 fastq.gz 20.1 GB
EGAF50000491210 fastq.gz 22.9 GB
EGAF50000491211 fastq.gz 26.2 GB
EGAF50000491212 fastq.gz 28.0 GB
EGAF50000491213 fastq.gz 19.8 GB
EGAF50000491214 fastq.gz 21.6 GB
EGAF50000491215 fastq.gz 20.3 GB
EGAF50000491216 fastq.gz 22.2 GB
EGAF50000491217 fastq.gz 22.0 GB
EGAF50000491218 fastq.gz 24.8 GB
EGAF50000491219 fastq.gz 24.7 GB
EGAF50000491220 fastq.gz 28.0 GB
EGAF50000491221 fastq.gz 21.0 GB
EGAF50000491222 fastq.gz 24.4 GB
EGAF50000491223 fastq.gz 21.3 GB
EGAF50000491224 fastq.gz 24.3 GB
EGAF50000491225 fastq.gz 20.8 GB
EGAF50000491226 fastq.gz 23.1 GB
EGAF50000491227 fastq.gz 25.0 GB
EGAF50000491228 fastq.gz 27.6 GB
EGAF50000491229 fastq.gz 21.0 GB
EGAF50000491230 fastq.gz 23.1 GB
EGAF50000491231 fastq.gz 23.3 GB
EGAF50000491232 fastq.gz 25.2 GB
EGAF50000491233 fastq.gz 17.6 GB
EGAF50000491234 fastq.gz 19.3 GB
EGAF50000491235 fastq.gz 18.8 GB
EGAF50000491236 fastq.gz 20.8 GB
EGAF50000491237 fastq.gz 21.3 GB
EGAF50000491238 fastq.gz 24.2 GB
EGAF50000491239 fastq.gz 17.1 GB
EGAF50000491240 fastq.gz 18.3 GB
EGAF50000491241 fastq.gz 20.9 GB
EGAF50000491242 fastq.gz 23.3 GB
EGAF50000491243 fastq.gz 19.0 GB
EGAF50000491244 fastq.gz 21.2 GB
EGAF50000491245 fastq.gz 20.3 GB
EGAF50000491246 fastq.gz 22.6 GB
EGAF50000491247 fastq.gz 19.7 GB
EGAF50000491248 fastq.gz 21.6 GB
EGAF50000491249 fastq.gz 19.5 GB
EGAF50000491250 fastq.gz 20.6 GB
EGAF50000491251 fastq.gz 18.2 GB
EGAF50000491252 fastq.gz 19.8 GB
EGAF50000491253 fastq.gz 24.1 GB
EGAF50000491254 fastq.gz 27.0 GB
EGAF50000491255 fastq.gz 21.3 GB
EGAF50000491256 fastq.gz 23.3 GB
EGAF50000491257 fastq.gz 25.7 GB
EGAF50000491258 fastq.gz 28.8 GB
EGAF50000491259 fastq.gz 20.7 GB
EGAF50000491260 fastq.gz 22.8 GB
EGAF50000491261 fastq.gz 25.6 GB
EGAF50000491262 fastq.gz 27.6 GB
EGAF50000491263 fastq.gz 22.3 GB
EGAF50000491264 fastq.gz 24.3 GB
EGAF50000491265 fastq.gz 18.2 GB
EGAF50000491266 fastq.gz 20.3 GB
EGAF50000491267 fastq.gz 26.1 GB
EGAF50000491268 fastq.gz 29.1 GB
EGAF50000491269 fastq.gz 17.9 GB
EGAF50000491270 fastq.gz 19.7 GB
EGAF50000491271 fastq.gz 23.9 GB
EGAF50000491272 fastq.gz 26.9 GB
EGAF50000491273 fastq.gz 19.3 GB
EGAF50000491274 fastq.gz 20.8 GB
EGAF50000491275 fastq.gz 23.3 GB
EGAF50000491276 fastq.gz 25.2 GB
EGAF50000491277 fastq.gz 23.5 GB
EGAF50000491278 fastq.gz 25.4 GB
EGAF50000491279 fastq.gz 22.5 GB
EGAF50000491280 fastq.gz 25.3 GB
EGAF50000491281 fastq.gz 21.3 GB
EGAF50000491282 fastq.gz 23.3 GB
EGAF50000491283 fastq.gz 21.6 GB
EGAF50000491284 fastq.gz 23.8 GB
EGAF50000491285 fastq.gz 19.4 GB
EGAF50000491286 fastq.gz 22.6 GB
EGAF50000491287 fastq.gz 22.1 GB
EGAF50000491288 fastq.gz 24.5 GB
EGAF50000491289 fastq.gz 19.5 GB
EGAF50000491290 fastq.gz 21.5 GB
EGAF50000491291 fastq.gz 17.4 GB
EGAF50000491292 fastq.gz 19.3 GB
EGAF50000491293 fastq.gz 26.1 GB
EGAF50000491294 fastq.gz 29.5 GB
EGAF50000491295 fastq.gz 21.4 GB
EGAF50000491296 fastq.gz 25.4 GB
EGAF50000491297 fastq.gz 26.7 GB
EGAF50000491298 fastq.gz 29.9 GB
EGAF50000491299 fastq.gz 18.6 GB
EGAF50000491300 fastq.gz 21.4 GB
EGAF50000491301 fastq.gz 18.6 GB
EGAF50000491302 fastq.gz 19.6 GB
EGAF50000491303 fastq.gz 21.8 GB
EGAF50000491304 fastq.gz 23.9 GB
EGAF50000491305 fastq.gz 18.5 GB
EGAF50000491306 fastq.gz 20.7 GB
EGAF50000491307 fastq.gz 19.1 GB
EGAF50000491308 fastq.gz 22.1 GB
EGAF50000491309 fastq.gz 27.0 GB
EGAF50000491310 fastq.gz 29.8 GB
EGAF50000491311 fastq.gz 18.6 GB
EGAF50000491312 fastq.gz 21.2 GB
EGAF50000491313 fastq.gz 22.4 GB
EGAF50000491314 fastq.gz 25.1 GB
EGAF50000491315 fastq.gz 26.5 GB
EGAF50000491316 fastq.gz 29.7 GB
EGAF50000491317 fastq.gz 23.2 GB
EGAF50000491318 fastq.gz 25.4 GB
EGAF50000491319 fastq.gz 20.2 GB
EGAF50000491320 fastq.gz 22.0 GB
EGAF50000491321 fastq.gz 19.7 GB
EGAF50000491322 fastq.gz 24.6 GB
EGAF50000491323 fastq.gz 22.0 GB
EGAF50000491324 fastq.gz 24.7 GB
EGAF50000491325 fastq.gz 19.4 GB
EGAF50000491326 fastq.gz 21.8 GB
EGAF50000491327 fastq.gz 19.9 GB
EGAF50000491328 fastq.gz 22.1 GB
EGAF50000491329 fastq.gz 21.7 GB
EGAF50000491330 fastq.gz 23.4 GB
EGAF50000491331 fastq.gz 19.9 GB
EGAF50000491332 fastq.gz 22.4 GB
EGAF50000491333 fastq.gz 25.0 GB
EGAF50000491334 fastq.gz 28.0 GB
EGAF50000491335 fastq.gz 26.5 GB
EGAF50000491336 fastq.gz 28.0 GB
EGAF50000491337 fastq.gz 22.8 GB
EGAF50000491338 fastq.gz 25.2 GB
EGAF50000491339 fastq.gz 19.1 GB
EGAF50000491340 fastq.gz 21.7 GB
EGAF50000491341 fastq.gz 22.0 GB
EGAF50000491342 fastq.gz 24.4 GB
EGAF50000491343 fastq.gz 19.3 GB
EGAF50000491344 fastq.gz 20.9 GB
EGAF50000491345 fastq.gz 18.3 GB
EGAF50000491346 fastq.gz 19.8 GB
EGAF50000491347 fastq.gz 19.8 GB
EGAF50000491348 fastq.gz 21.3 GB
EGAF50000491349 fastq.gz 23.1 GB
EGAF50000491350 fastq.gz 25.4 GB
EGAF50000491351 fastq.gz 16.8 GB
EGAF50000491352 fastq.gz 18.5 GB
EGAF50000491353 fastq.gz 20.7 GB
EGAF50000491354 fastq.gz 23.2 GB
EGAF50000491355 fastq.gz 20.0 GB
EGAF50000491356 fastq.gz 22.5 GB
EGAF50000491357 fastq.gz 22.5 GB
EGAF50000491358 fastq.gz 24.5 GB
EGAF50000491359 fastq.gz 27.5 GB
EGAF50000491360 fastq.gz 30.0 GB
EGAF50000491361 fastq.gz 17.4 GB
EGAF50000491362 fastq.gz 19.5 GB
EGAF50000491363 fastq.gz 15.1 GB
EGAF50000491364 fastq.gz 17.1 GB
EGAF50000491365 fastq.gz 17.0 GB
EGAF50000491366 fastq.gz 20.1 GB
EGAF50000491367 fastq.gz 25.5 GB
EGAF50000491368 fastq.gz 29.2 GB
EGAF50000491369 fastq.gz 19.4 GB
EGAF50000491370 fastq.gz 21.5 GB
EGAF50000491371 fastq.gz 19.1 GB
EGAF50000491372 fastq.gz 21.4 GB
EGAF50000491373 fastq.gz 21.9 GB
EGAF50000491374 fastq.gz 24.5 GB
EGAF50000491375 fastq.gz 20.3 GB
EGAF50000491376 fastq.gz 22.5 GB
EGAF50000491377 fastq.gz 20.4 GB
EGAF50000491378 fastq.gz 21.7 GB
EGAF50000491379 fastq.gz 20.0 GB
EGAF50000491380 fastq.gz 22.2 GB
EGAF50000491381 fastq.gz 22.9 GB
EGAF50000491382 fastq.gz 25.2 GB
EGAF50000491383 fastq.gz 16.6 GB
EGAF50000491384 fastq.gz 19.0 GB
EGAF50000491385 fastq.gz 26.9 GB
EGAF50000491386 fastq.gz 30.1 GB
EGAF50000491387 fastq.gz 19.5 GB
EGAF50000491388 fastq.gz 21.9 GB
EGAF50000491389 fastq.gz 19.4 GB
EGAF50000491390 fastq.gz 21.0 GB
EGAF50000491391 fastq.gz 18.9 GB
EGAF50000491392 fastq.gz 23.9 GB
EGAF50000491393 fastq.gz 22.9 GB
EGAF50000491394 fastq.gz 26.4 GB
EGAF50000491395 fastq.gz 20.0 GB
EGAF50000491396 fastq.gz 22.2 GB
EGAF50000491397 fastq.gz 21.1 GB
EGAF50000491398 fastq.gz 23.5 GB
EGAF50000491399 fastq.gz 20.1 GB
EGAF50000491400 fastq.gz 22.2 GB
EGAF50000491401 fastq.gz 22.4 GB
EGAF50000491402 fastq.gz 24.8 GB
EGAF50000491403 fastq.gz 24.8 GB
EGAF50000491404 fastq.gz 27.5 GB
EGAF50000491405 fastq.gz 16.7 GB
EGAF50000491406 fastq.gz 18.6 GB
EGAF50000491407 fastq.gz 22.7 GB
EGAF50000491408 fastq.gz 25.4 GB
EGAF50000491409 fastq.gz 24.1 GB
EGAF50000491410 fastq.gz 26.7 GB
EGAF50000491411 fastq.gz 19.6 GB
EGAF50000491412 fastq.gz 21.8 GB
EGAF50000491413 fastq.gz 18.1 GB
EGAF50000491414 fastq.gz 19.4 GB
EGAF50000491415 fastq.gz 21.2 GB
EGAF50000491416 fastq.gz 23.0 GB
EGAF50000491417 fastq.gz 15.6 GB
EGAF50000491418 fastq.gz 16.7 GB
EGAF50000491419 fastq.gz 19.6 GB
EGAF50000491420 fastq.gz 22.0 GB
EGAF50000491421 fastq.gz 19.5 GB
EGAF50000491422 fastq.gz 21.9 GB
EGAF50000491423 fastq.gz 22.3 GB
EGAF50000491424 fastq.gz 24.4 GB
EGAF50000491425 fastq.gz 21.7 GB
EGAF50000491426 fastq.gz 23.3 GB
EGAF50000491427 fastq.gz 20.1 GB
EGAF50000491428 fastq.gz 22.3 GB
EGAF50000491429 fastq.gz 24.2 GB
EGAF50000491430 fastq.gz 27.0 GB
EGAF50000491431 fastq.gz 20.0 GB
EGAF50000491432 fastq.gz 23.7 GB
EGAF50000491433 fastq.gz 18.5 GB
EGAF50000491434 fastq.gz 20.3 GB
EGAF50000491435 fastq.gz 23.9 GB
EGAF50000491436 fastq.gz 26.4 GB
EGAF50000491437 fastq.gz 20.0 GB
EGAF50000491438 fastq.gz 22.6 GB
EGAF50000491439 fastq.gz 16.1 GB
EGAF50000491440 fastq.gz 18.0 GB
EGAF50000491441 fastq.gz 20.0 GB
EGAF50000491442 fastq.gz 22.0 GB
EGAF50000491443 fastq.gz 20.2 GB
EGAF50000491444 fastq.gz 22.2 GB
EGAF50000491445 fastq.gz 19.5 GB
EGAF50000491446 fastq.gz 20.9 GB
EGAF50000491447 fastq.gz 24.0 GB
EGAF50000491448 fastq.gz 26.4 GB
EGAF50000491449 fastq.gz 21.2 GB
EGAF50000491450 fastq.gz 23.6 GB
EGAF50000491451 fastq.gz 23.2 GB
EGAF50000491452 fastq.gz 26.2 GB
EGAF50000491453 fastq.gz 21.4 GB
EGAF50000491454 fastq.gz 23.7 GB
EGAF50000491455 fastq.gz 19.4 GB
EGAF50000491456 fastq.gz 21.6 GB
EGAF50000491457 fastq.gz 21.5 GB
EGAF50000491458 fastq.gz 23.9 GB
EGAF50000491459 fastq.gz 21.6 GB
EGAF50000491460 fastq.gz 23.9 GB
EGAF50000491461 fastq.gz 23.2 GB
EGAF50000491462 fastq.gz 25.6 GB
EGAF50000491463 fastq.gz 24.4 GB
EGAF50000491464 fastq.gz 26.6 GB
EGAF50000491465 fastq.gz 17.9 GB
EGAF50000491466 fastq.gz 19.3 GB
EGAF50000491467 fastq.gz 21.0 GB
EGAF50000491468 fastq.gz 23.2 GB
EGAF50000491469 fastq.gz 24.6 GB
EGAF50000491470 fastq.gz 27.0 GB
EGAF50000491471 fastq.gz 19.6 GB
EGAF50000491472 fastq.gz 21.7 GB
EGAF50000491473 fastq.gz 21.0 GB
EGAF50000491474 fastq.gz 23.5 GB
EGAF50000491475 fastq.gz 17.7 GB
EGAF50000491476 fastq.gz 20.0 GB
EGAF50000491477 fastq.gz 19.9 GB
EGAF50000491478 fastq.gz 21.5 GB
EGAF50000491479 fastq.gz 22.9 GB
EGAF50000491480 fastq.gz 26.2 GB
EGAF50000491481 fastq.gz 21.3 GB
EGAF50000491482 fastq.gz 28.4 GB
EGAF50000491483 fastq.gz 24.8 GB
EGAF50000491484 fastq.gz 27.2 GB
EGAF50000491485 fastq.gz 24.6 GB
EGAF50000491486 fastq.gz 28.0 GB
282 Files (6.3 TB)