About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA sequencing of BCP-LBL and EM B-ALL patients samples

In order to perform comprehensive transcriptomics and gene fusion analyses of a cohort of BCP-LBL and extramedullary (EM) manifestations of B-ALL patients, we performed RNA sequencing of 16 tissue samples from BCP-LBL and EM B-ALL patients. Because the material was available as FFPE, and had a relative low quality, we used a capture-based approach, where NGS libraries obtained from total RNA were captured in 4-plex, using a whole exome capture panel.

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DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

BCP-LBL Policy

Researchers can use the data as far as they acknowledge our work in a future publication.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000289 Transcriptome Analysis
EGAS50000000290 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000098122 fastq.gz 7.3 GB Report
EGAF50000098123 fastq.gz 7.5 GB Report
EGAF50000098124 fastq.gz 8.9 GB Report
EGAF50000098125 fastq.gz 9.2 GB Report
EGAF50000098126 fastq.gz 11.7 GB Report
EGAF50000098127 fastq.gz 12.1 GB Report
EGAF50000098128 fastq.gz 3.6 GB Report
EGAF50000098129 fastq.gz 3.7 GB Report
EGAF50000098130 fastq.gz 9.8 GB Report
EGAF50000098131 fastq.gz 10.2 GB Report
EGAF50000098132 fastq.gz 12.9 GB Report
EGAF50000098133 fastq.gz 13.0 GB Report
EGAF50000098134 fastq.gz 9.9 GB Report
EGAF50000098135 fastq.gz 10.2 GB Report
EGAF50000098136 fastq.gz 4.8 GB Report
EGAF50000098137 fastq.gz 4.7 GB Report
EGAF50000098138 fastq.gz 1.9 GB Report
EGAF50000098139 fastq.gz 1.9 GB Report
EGAF50000098140 fastq.gz 10.6 GB Report
EGAF50000098141 fastq.gz 10.4 GB Report
EGAF50000098142 fastq.gz 8.4 GB Report
EGAF50000098143 fastq.gz 8.5 GB Report
EGAF50000098144 fastq.gz 13.5 GB Report
EGAF50000098145 fastq.gz 14.2 GB Report
EGAF50000098146 fastq.gz 8.0 GB Report
EGAF50000098147 fastq.gz 7.9 GB Report
EGAF50000098148 fastq.gz 12.1 GB Report
EGAF50000098149 fastq.gz 12.5 GB Report
EGAF50000098150 fastq.gz 6.4 GB Report
EGAF50000098151 fastq.gz 6.2 GB Report
EGAF50000098152 fastq.gz 5.6 GB Report
EGAF50000098153 fastq.gz 5.6 GB Report
EGAF50000098154 fastq.gz 6.4 GB Report
EGAF50000098155 fastq.gz 6.4 GB Report
EGAF50000098156 fastq.gz 8.7 GB Report
EGAF50000098157 fastq.gz 9.0 GB Report
EGAF50000098158 fastq.gz 8.7 GB Report
EGAF50000098159 fastq.gz 8.8 GB Report
EGAF50000098160 fastq.gz 5.1 GB Report
EGAF50000098161 fastq.gz 5.2 GB Report
EGAF50000098162 fastq.gz 12.9 GB Report
EGAF50000098163 fastq.gz 12.9 GB Report
EGAF50000098164 fastq.gz 6.1 GB Report
EGAF50000098165 fastq.gz 6.3 GB Report
EGAF50000098166 fastq.gz 5.5 GB Report
EGAF50000098167 fastq.gz 5.4 GB Report
EGAF50000098168 fastq.gz 14.3 GB Report
EGAF50000098169 fastq.gz 14.7 GB Report
EGAF50000098170 fastq.gz 9.4 GB Report
EGAF50000098171 fastq.gz 9.6 GB Report
EGAF50000098172 fastq.gz 11.1 GB Report
EGAF50000098173 fastq.gz 11.1 GB Report
EGAF50000098174 fastq.gz 8.5 GB Report
EGAF50000098175 fastq.gz 8.4 GB Report
EGAF50000098176 fastq.gz 4.3 GB Report
EGAF50000098177 fastq.gz 4.3 GB Report
EGAF50000098178 fastq.gz 9.4 GB Report
EGAF50000098179 fastq.gz 9.6 GB
EGAF50000098180 fastq.gz 10.7 GB Report
EGAF50000098181 fastq.gz 10.6 GB Report
EGAF50000098182 fastq.gz 9.5 GB Report
EGAF50000098183 fastq.gz 9.2 GB Report
EGAF50000098184 fastq.gz 4.1 GB Report
EGAF50000098185 fastq.gz 4.0 GB Report
EGAF50000098186 fastq.gz 16.9 GB Report
EGAF50000098187 fastq.gz 17.6 GB Report
EGAF50000098188 fastq.gz 14.9 GB Report
EGAF50000098189 fastq.gz 15.1 GB Report
EGAF50000098190 fastq.gz 7.2 GB Report
EGAF50000098191 fastq.gz 7.4 GB Report
EGAF50000098192 fastq.gz 9.9 GB Report
EGAF50000098193 fastq.gz 10.1 GB Report
EGAF50000098194 fastq.gz 13.1 GB Report
EGAF50000098195 fastq.gz 12.6 GB Report
EGAF50000098196 fastq.gz 10.4 GB Report
EGAF50000098197 fastq.gz 10.4 GB Report
EGAF50000098198 fastq.gz 9.1 GB Report
EGAF50000098199 fastq.gz 9.0 GB Report
EGAF50000098200 fastq.gz 3.2 GB Report
EGAF50000098201 fastq.gz 3.2 GB Report
EGAF50000098202 fastq.gz 13.0 GB Report
EGAF50000098203 fastq.gz 13.3 GB Report
EGAF50000098204 fastq.gz 15.2 GB Report
EGAF50000098205 fastq.gz 15.2 GB Report
EGAF50000098206 fastq.gz 8.8 GB Report
EGAF50000098207 fastq.gz 8.8 GB Report
EGAF50000098208 fastq.gz 13.9 GB Report
EGAF50000098209 fastq.gz 14.7 GB Report
EGAF50000098210 fastq.gz 15.1 GB Report
EGAF50000098211 fastq.gz 14.9 GB Report
EGAF50000098212 fastq.gz 11.2 GB Report
EGAF50000098213 fastq.gz 10.9 GB Report
EGAF50000098214 fastq.gz 8.4 GB Report
EGAF50000098215 fastq.gz 8.7 GB Report
EGAF50000098216 fastq.gz 12.2 GB Report
EGAF50000098217 fastq.gz 12.7 GB Report
EGAF50000098218 fastq.gz 9.0 GB Report
EGAF50000098219 fastq.gz 8.9 GB Report
EGAF50000098220 fastq.gz 5.0 GB Report
EGAF50000098221 fastq.gz 4.7 GB Report
EGAF50000098222 fastq.gz 14.0 GB Report
EGAF50000098223 fastq.gz 13.7 GB Report
EGAF50000098224 fastq.gz 9.4 GB Report
EGAF50000098225 fastq.gz 9.9 GB Report
EGAF50000098226 fastq.gz 6.7 GB Report
EGAF50000098227 fastq.gz 6.9 GB Report
EGAF50000098228 fastq.gz 5.4 GB Report
EGAF50000098229 fastq.gz 5.4 GB Report
EGAF50000098230 fastq.gz 13.4 GB Report
EGAF50000098231 fastq.gz 13.5 GB Report
EGAF50000098232 fastq.gz 9.9 GB Report
EGAF50000098233 fastq.gz 9.6 GB Report
EGAF50000098234 fastq.gz 7.4 GB Report
EGAF50000098235 fastq.gz 7.3 GB Report
EGAF50000098236 fastq.gz 11.9 GB Report
EGAF50000098237 fastq.gz 12.0 GB Report
EGAF50000098238 fastq.gz 18.9 GB Report
EGAF50000098239 fastq.gz 19.7 GB Report
EGAF50000098240 fastq.gz 11.8 GB Report
EGAF50000098241 fastq.gz 12.0 GB Report
EGAF50000098242 fastq.gz 8.2 GB Report
EGAF50000098243 fastq.gz 8.1 GB Report
EGAF50000098244 fastq.gz 8.9 GB Report
EGAF50000098245 fastq.gz 8.7 GB Report
EGAF50000098246 fastq.gz 14.9 GB Report
EGAF50000098247 fastq.gz 15.3 GB Report
EGAF50000098248 fastq.gz 11.1 GB Report
EGAF50000098249 fastq.gz 10.8 GB Report
EGAF50000098250 fastq.gz 7.7 GB Report
EGAF50000098251 fastq.gz 7.8 GB Report
EGAF50000098252 fastq.gz 19.4 GB Report
EGAF50000098253 fastq.gz 19.4 GB Report
EGAF50000098254 fastq.gz 12.7 GB Report
EGAF50000098255 fastq.gz 12.6 GB Report
EGAF50000098256 fastq.gz 11.3 GB Report
EGAF50000098257 fastq.gz 11.6 GB Report
EGAF50000098258 fastq.gz 5.4 GB Report
EGAF50000098259 fastq.gz 5.6 GB Report
EGAF50000098260 fastq.gz 13.0 GB Report
EGAF50000098261 fastq.gz 13.1 GB Report
EGAF50000098262 fastq.gz 8.2 GB Report
EGAF50000098263 fastq.gz 8.5 GB Report
EGAF50000098264 fastq.gz 15.9 GB Report
EGAF50000098265 fastq.gz 16.1 GB Report
EGAF50000098266 fastq.gz 9.8 GB Report
EGAF50000098267 fastq.gz 10.2 GB Report
EGAF50000098268 fastq.gz 12.7 GB Report
EGAF50000098269 fastq.gz 13.5 GB Report
EGAF50000098270 fastq.gz 14.6 GB Report
EGAF50000098271 fastq.gz 15.0 GB Report
EGAF50000098272 fastq.gz 12.4 GB Report
EGAF50000098273 fastq.gz 12.7 GB Report
EGAF50000098274 fastq.gz 17.9 GB Report
EGAF50000098275 fastq.gz 17.5 GB Report
EGAF50000098276 fastq.gz 12.7 GB Report
EGAF50000098277 fastq.gz 13.0 GB Report
EGAF50000098278 fastq.gz 15.9 GB Report
EGAF50000098279 fastq.gz 16.5 GB Report
EGAF50000098280 fastq.gz 13.4 GB Report
EGAF50000098281 fastq.gz 13.6 GB Report
EGAF50000098282 fastq.gz 13.6 GB Report
EGAF50000098283 fastq.gz 13.6 GB Report
EGAF50000098284 fastq.gz 15.8 GB Report
EGAF50000098285 fastq.gz 16.3 GB Report
EGAF50000098286 fastq.gz 11.3 GB Report
EGAF50000098287 fastq.gz 11.4 GB Report
EGAF50000098288 fastq.gz 14.0 GB Report
EGAF50000098289 fastq.gz 14.9 GB Report
EGAF50000098290 fastq.gz 7.8 GB Report
EGAF50000098291 fastq.gz 8.3 GB Report
EGAF50000098292 fastq.gz 10.7 GB Report
EGAF50000098293 fastq.gz 10.7 GB Report
EGAF50000098294 fastq.gz 15.2 GB Report
EGAF50000098295 fastq.gz 15.2 GB Report
EGAF50000098296 fastq.gz 11.3 GB Report
EGAF50000098297 fastq.gz 11.3 GB Report
EGAF50000098298 fastq.gz 16.6 GB Report
EGAF50000098299 fastq.gz 17.1 GB Report
EGAF50000098300 fastq.gz 7.6 GB Report
EGAF50000098301 fastq.gz 7.6 GB Report
EGAF50000498676 fastq.gz 4.6 GB
EGAF50000498677 fastq.gz 4.5 GB
EGAF50000498678 fastq.gz 6.4 GB
EGAF50000498679 fastq.gz 6.4 GB
EGAF50000498680 fastq.gz 4.5 GB
EGAF50000498681 fastq.gz 4.6 GB
EGAF50000498682 fastq.gz 9.0 GB
EGAF50000498683 fastq.gz 9.2 GB
EGAF50000498684 fastq.gz 5.1 GB
EGAF50000498685 fastq.gz 5.2 GB
EGAF50000498686 fastq.gz 9.0 GB
EGAF50000498687 fastq.gz 9.4 GB
EGAF50000498688 fastq.gz 5.1 GB
EGAF50000498689 fastq.gz 5.2 GB
EGAF50000498690 fastq.gz 21.1 GB
EGAF50000498691 fastq.gz 21.1 GB
EGAF50000498692 fastq.gz 2.5 GB
EGAF50000498693 fastq.gz 2.6 GB
EGAF50000498694 fastq.gz 7.9 GB
EGAF50000498695 fastq.gz 8.1 GB
EGAF50000498696 fastq.gz 10.8 GB
EGAF50000498697 fastq.gz 11.4 GB
EGAF50000498698 fastq.gz 8.2 GB
EGAF50000498699 fastq.gz 8.7 GB
EGAF50000498700 fastq.gz 10.5 GB
EGAF50000498701 fastq.gz 11.1 GB
EGAF50000498702 fastq.gz 15.4 GB
EGAF50000498703 fastq.gz 15.5 GB
EGAF50000498704 fastq.gz 6.2 GB
EGAF50000498705 fastq.gz 6.3 GB
EGAF50000498706 fastq.gz 27.4 GB
EGAF50000498707 fastq.gz 27.8 GB
212 Files (2.2 TB)