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Fragmentomics analyses of urinary cfDNA for urologic cancers

This dataset contains sequencing data of human urinary cell-free DNA. Whole-genome sequencing (WGS) and whole-genome bisulfite sequencing (WGBS) was performed after DNA extraction from the urine samples. All samples were pair-end sequencing on Illumina system and were aligned to human genome GRCh37 (hg19). WGS and WGBS reads were aligned by SOAP2 and Methyl-Pipe, respectively. The dataset includes samples from healthy subjects, haematuria (non-cancer), and patients of bladder, kidney, or prostate cancer. Pair-end FASTQ files were provided for all the samples mentioned above.

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This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG).

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001431 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000452499 fq.gz 2.0 GB
EGAF50000452500 fq.gz 2.1 GB
EGAF50000452501 fq.gz 1.3 GB
EGAF50000452502 fq.gz 1.3 GB
EGAF50000452505 fq.gz 1.6 GB
EGAF50000452506 fq.gz 1.7 GB
EGAF50000452507 fq.gz 1.3 GB
EGAF50000452508 fq.gz 1.4 GB
EGAF50000452509 fq.gz 1.5 GB
EGAF50000452510 fq.gz 1.5 GB
EGAF50000452511 fq.gz 1.8 GB
EGAF50000452512 fq.gz 1.9 GB
EGAF50000452513 fq.gz 1.8 GB
EGAF50000452514 fq.gz 2.0 GB
EGAF50000452517 fq.gz 1.2 GB
EGAF50000452518 fq.gz 1.2 GB
EGAF50000452519 fq.gz 1.2 GB
EGAF50000452520 fq.gz 1.2 GB
EGAF50000452521 fq.gz 1.3 GB
EGAF50000452522 fq.gz 1.4 GB
EGAF50000452523 fq.gz 1.2 GB
EGAF50000452524 fq.gz 1.3 GB
EGAF50000452587 fq.gz 1.4 GB
EGAF50000452588 fq.gz 1.5 GB
EGAF50000452591 fq.gz 1.6 GB
EGAF50000452592 fq.gz 1.7 GB
EGAF50000452597 fq.gz 1.2 GB
EGAF50000452598 fq.gz 1.3 GB
EGAF50000452599 fq.gz 594.3 MB
EGAF50000452600 fq.gz 648.7 MB
EGAF50000452603 fq.gz 1.0 GB
EGAF50000452604 fq.gz 1.1 GB
EGAF50000452605 fq.gz 948.3 MB
EGAF50000452606 fq.gz 1.0 GB
EGAF50000452607 fq.gz 1.7 GB
EGAF50000452608 fq.gz 1.9 GB
EGAF50000452609 fq.gz 915.9 MB
EGAF50000452610 fq.gz 927.3 MB
EGAF50000452611 fq.gz 781.2 MB
EGAF50000452612 fq.gz 848.0 MB
EGAF50000452613 fq.gz 1.2 GB
EGAF50000452614 fq.gz 1.3 GB
EGAF50000452615 fq.gz 891.9 MB
EGAF50000452616 fq.gz 903.7 MB
EGAF50000452617 fq.gz 823.7 MB
EGAF50000452618 fq.gz 902.0 MB
EGAF50000452619 fq.gz 1.2 GB
EGAF50000452620 fq.gz 1.3 GB
EGAF50000452621 fq.gz 1.5 GB
EGAF50000452622 fq.gz 1.6 GB
EGAF50000452623 fq.gz 1.2 GB
EGAF50000452624 fq.gz 1.3 GB
EGAF50000452625 fq.gz 1.5 GB
EGAF50000452626 fq.gz 1.7 GB
EGAF50000452627 fq.gz 996.8 MB
EGAF50000452628 fq.gz 1.0 GB
EGAF50000452629 fq.gz 809.8 MB
EGAF50000452630 fq.gz 885.4 MB
EGAF50000452631 fq.gz 1.2 GB
EGAF50000452632 fq.gz 1.2 GB
EGAF50000452633 fq.gz 1.2 GB
EGAF50000452634 fq.gz 1.3 GB
EGAF50000452635 fq.gz 830.1 MB
EGAF50000452636 fq.gz 850.4 MB
EGAF50000452637 fq.gz 1.2 GB
EGAF50000452638 fq.gz 1.3 GB
EGAF50000452639 fq.gz 847.0 MB
EGAF50000452640 fq.gz 883.1 MB
EGAF50000452641 fq.gz 901.5 MB
EGAF50000452642 fq.gz 920.5 MB
EGAF50000452643 fq.gz 811.3 MB
EGAF50000452644 fq.gz 830.6 MB
EGAF50000452649 fq.gz 3.0 GB
EGAF50000452650 fq.gz 3.2 GB
EGAF50000452651 fq.gz 1.1 GB
EGAF50000452652 fq.gz 1.1 GB
EGAF50000452653 fq.gz 1.7 GB
EGAF50000452654 fq.gz 1.7 GB
EGAF50000452655 fq.gz 1.1 GB
EGAF50000452656 fq.gz 1.2 GB
EGAF50000452657 fq.gz 1.3 GB
EGAF50000452658 fq.gz 1.4 GB
EGAF50000452659 fq.gz 1.1 GB
EGAF50000452660 fq.gz 1.1 GB
EGAF50000452661 fq.gz 1.1 GB
EGAF50000452662 fq.gz 1.2 GB
EGAF50000452665 fq.gz 1.4 GB
EGAF50000452666 fq.gz 1.5 GB
EGAF50000500973 fq.gz 1.4 GB
EGAF50000500974 fq.gz 1.4 GB
EGAF50000500975 fq.gz 2.4 GB
EGAF50000500976 fq.gz 2.1 GB
EGAF50000500977 fq.gz 2.9 GB
EGAF50000500978 fq.gz 3.1 GB
EGAF50000500979 fq.gz 9.7 GB
EGAF50000500980 fq.gz 1.3 GB
EGAF50000500981 fq.gz 1.5 GB
EGAF50000500982 fq.gz 2.4 GB
EGAF50000500983 fq.gz 2.7 GB
EGAF50000500984 fq.gz 1.6 GB
EGAF50000500985 fq.gz 9.7 GB
EGAF50000500986 fq.gz 1.7 GB
EGAF50000500987 fq.gz 1.8 GB
EGAF50000500988 fq.gz 1.9 GB
EGAF50000500989 fq.gz 2.9 GB
EGAF50000500990 fq.gz 3.0 GB
EGAF50000500991 fq.gz 12.5 GB
EGAF50000500992 fq.gz 3.4 GB
EGAF50000500993 fq.gz 3.8 GB
EGAF50000500994 fq.gz 2.9 GB
EGAF50000500995 fq.gz 3.3 GB
EGAF50000500996 fq.gz 1.7 GB
EGAF50000500997 fq.gz 12.3 GB
EGAF50000500998 fq.gz 2.0 GB
EGAF50000500999 fq.gz 2.3 GB
EGAF50000501000 fq.gz 2.6 GB
EGAF50000501001 fq.gz 2.3 GB
EGAF50000501002 fq.gz 2.4 GB
EGAF50000501003 fq.gz 2.6 GB
EGAF50000501004 fq.gz 3.0 GB
EGAF50000501005 fq.gz 2.5 GB
EGAF50000501006 fq.gz 2.6 GB
EGAF50000501007 fq.gz 5.8 GB
EGAF50000501008 fq.gz 5.5 GB
EGAF50000501009 fq.gz 2.7 GB
EGAF50000501010 fq.gz 3.1 GB
EGAF50000501011 fq.gz 1.7 GB
EGAF50000501012 fq.gz 1.8 GB
EGAF50000501013 fq.gz 1.5 GB
EGAF50000501014 fq.gz 1.6 GB
EGAF50000501015 fq.gz 2.2 GB
EGAF50000501016 fq.gz 2.6 GB
EGAF50000501017 fq.gz 2.3 GB
EGAF50000501018 fq.gz 2.9 GB
EGAF50000501019 fq.gz 4.3 GB
EGAF50000501020 fq.gz 3.0 GB
EGAF50000501021 fq.gz 2.7 GB
EGAF50000501022 fq.gz 3.4 GB
EGAF50000501023 fq.gz 4.1 GB
EGAF50000501024 fq.gz 2.8 GB
EGAF50000501025 fq.gz 3.0 GB
EGAF50000501026 fq.gz 2.1 GB
EGAF50000501027 fq.gz 1.5 GB
EGAF50000501028 fq.gz 2.4 GB
EGAF50000501029 fq.gz 3.1 GB
EGAF50000501030 fq.gz 1.5 GB
EGAF50000501031 fq.gz 2.8 GB
EGAF50000501032 fq.gz 4.1 GB
EGAF50000501033 fq.gz 2.6 GB
EGAF50000501034 fq.gz 4.3 GB
EGAF50000501035 fq.gz 2.1 GB
EGAF50000501036 fq.gz 1.6 GB
EGAF50000501037 fq.gz 2.3 GB
EGAF50000501038 fq.gz 1.7 GB
EGAF50000501039 fq.gz 2.1 GB
EGAF50000501040 fq.gz 3.5 GB
EGAF50000501041 fq.gz 2.1 GB
EGAF50000501042 fq.gz 3.7 GB
EGAF50000501043 fq.gz 3.3 GB
EGAF50000501044 fq.gz 3.6 GB
EGAF50000501045 fq.gz 3.5 GB
EGAF50000501046 fq.gz 3.5 GB
EGAF50000501047 fq.gz 1.0 GB
EGAF50000501048 fq.gz 1.1 GB
EGAF50000501049 fq.gz 2.0 GB
EGAF50000501050 fq.gz 4.4 GB
EGAF50000501051 fq.gz 2.1 GB
EGAF50000501052 fq.gz 2.2 GB
EGAF50000501053 fq.gz 4.3 GB
EGAF50000501054 fq.gz 1.1 GB
EGAF50000501055 fq.gz 2.3 GB
EGAF50000501056 fq.gz 1.1 GB
EGAF50000501057 fq.gz 1.6 GB
EGAF50000501058 fq.gz 18.5 GB
EGAF50000501059 fq.gz 1.6 GB
EGAF50000501060 fq.gz 8.6 GB
EGAF50000501061 fq.gz 8.8 GB
EGAF50000501062 fq.gz 18.9 GB
EGAF50000501063 fq.gz 8.6 GB
EGAF50000501064 fq.gz 5.4 GB
EGAF50000501065 fq.gz 8.9 GB
EGAF50000501066 fq.gz 5.5 GB
EGAF50000501067 fq.gz 2.5 GB
EGAF50000501068 fq.gz 2.6 GB
EGAF50000501069 fq.gz 2.6 GB
EGAF50000501070 fq.gz 2.6 GB
EGAF50000501071 fq.gz 3.4 GB
EGAF50000501072 fq.gz 3.5 GB
EGAF50000501073 fq.gz 8.6 GB
EGAF50000501074 fq.gz 8.8 GB
EGAF50000501075 fq.gz 10.5 GB
EGAF50000501076 fq.gz 10.7 GB
EGAF50000501077 fq.gz 6.7 GB
EGAF50000501078 fq.gz 7.0 GB
EGAF50000501079 fq.gz 3.2 GB
EGAF50000501080 fq.gz 3.2 GB
EGAF50000501081 fq.gz 7.6 GB
EGAF50000501082 fq.gz 7.7 GB
EGAF50000501083 fq.gz 1.5 GB
EGAF50000501084 fq.gz 1.5 GB
EGAF50000501085 fq.gz 2.2 GB
EGAF50000501086 fq.gz 2.2 GB
EGAF50000501087 fq.gz 2.5 GB
EGAF50000501088 fq.gz 2.5 GB
EGAF50000501089 fq.gz 2.2 GB
EGAF50000501090 fq.gz 2.2 GB
EGAF50000501091 fq.gz 1.9 GB
EGAF50000501092 fq.gz 1.9 GB
EGAF50000501093 fq.gz 2.2 GB
EGAF50000501094 fq.gz 2.2 GB
EGAF50000501095 fq.gz 5.9 GB
EGAF50000501096 fq.gz 5.9 GB
EGAF50000501097 fq.gz 10.8 GB
EGAF50000501098 fq.gz 11.0 GB
EGAF50000501099 fq.gz 1.4 GB
EGAF50000501100 fq.gz 1.3 GB
EGAF50000501101 fq.gz 3.2 GB
EGAF50000501102 fq.gz 3.2 GB
EGAF50000501103 fq.gz 5.9 GB
EGAF50000501104 fq.gz 5.9 GB
EGAF50000501105 fq.gz 7.9 GB
EGAF50000501106 fq.gz 8.1 GB
EGAF50000501107 fq.gz 10.3 GB
EGAF50000501108 fq.gz 10.4 GB
EGAF50000501109 fq.gz 4.5 GB
EGAF50000501110 fq.gz 4.6 GB
EGAF50000501111 fq.gz 10.9 GB
EGAF50000501112 fq.gz 11.2 GB
EGAF50000501113 fq.gz 15.9 GB
EGAF50000501114 fq.gz 16.4 GB
EGAF50000501115 fq.gz 3.6 GB
EGAF50000501116 fq.gz 3.7 GB
EGAF50000501117 fq.gz 1.9 GB
EGAF50000501118 fq.gz 2.0 GB
EGAF50000501119 fq.gz 15.3 GB
EGAF50000501120 fq.gz 17.4 GB
EGAF50000501121 fq.gz 1.8 GB
EGAF50000501122 fq.gz 2.0 GB
EGAF50000501123 fq.gz 973.3 MB
EGAF50000501124 fq.gz 993.5 MB
EGAF50000501125 fq.gz 14.6 GB
EGAF50000501126 fq.gz 15.2 GB
EGAF50000501127 fq.gz 3.3 GB
EGAF50000501128 fq.gz 3.4 GB
EGAF50000501129 fq.gz 2.4 GB
EGAF50000501130 fq.gz 2.8 GB
EGAF50000501131 fq.gz 1.6 GB
EGAF50000501132 fq.gz 1.7 GB
EGAF50000501133 fq.gz 6.3 GB
EGAF50000501134 fq.gz 6.5 GB
EGAF50000501135 fq.gz 8.7 GB
EGAF50000501136 fq.gz 8.7 GB
EGAF50000501137 fq.gz 16.2 GB
EGAF50000501138 fq.gz 18.7 GB
EGAF50000501139 fq.gz 1.9 GB
EGAF50000501140 fq.gz 2.0 GB
EGAF50000501141 fq.gz 1.3 GB
EGAF50000501142 fq.gz 1.3 GB
EGAF50000501143 fq.gz 1.3 GB
EGAF50000501144 fq.gz 1.3 GB
EGAF50000501145 fq.gz 1.1 GB
EGAF50000501146 fq.gz 1.1 GB
262 Files (894.3 GB)