Bulk RNA and ATACseq of 2 XLP patients and 5-6 HD
The dataset contains five samples from P1, one pre-HSCT and four post-HSCT, one sample from P2 and 5-6 HD. RNAseq reads were processed using the LUMC BIOWDL RNAseq pipeline v5.0.0 (https://github.com/biowdl/RNA-seq). Genes with log2CPM≥1 in at least 10% of all samples were retained for downstream analysis. Differential gene expression analysis was performed using the dgeAnalysis R-Shiny application (https://github.com/LUMC/dgeAnalysis/tree/v1.4.4). ATACseq reads were processed using the LUMC BIOWDL Chipseq pipeline 1.0.0-dev (https://github.com/biowdl/ChIP-seq).
- 24/11/2025
- 12 samples
- DAC: EGAC50000000822
- Technology: Illumina NovaSeq 6000
Policy: LUMC Department Pediatrics, Laboratory for Pediatric Immunology
Access to this dataset is controlled by LUMC Department Pediatrics, Laboratory for Pediatric Immunology. Access to data will be granted to qualified investigators for appropriate use. Please contact this DAC to request data access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001437 | Transcriptome Sequencing | |
| EGAS50000001438 | Epigenetics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF50000502319 | fastq.gz | 5.0 GB |
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| EGAF50000502320 | fastq.gz | 5.3 GB |
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| EGAF50000502321 | fastq.gz | 3.6 GB |
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| EGAF50000502322 | fastq.gz | 3.8 GB |
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| EGAF50000502323 | fastq.gz | 2.6 GB |
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| EGAF50000502324 | fastq.gz | 2.7 GB |
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| EGAF50000502325 | fastq.gz | 4.1 GB |
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| EGAF50000502326 | fastq.gz | 4.3 GB |
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| EGAF50000502327 | fastq.gz | 3.1 GB |
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| EGAF50000502328 | fastq.gz | 3.3 GB |
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| EGAF50000502329 | fastq.gz | 3.4 GB |
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| EGAF50000502330 | fastq.gz | 3.6 GB |
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| EGAF50000502331 | fastq.gz | 2.4 GB |
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| EGAF50000502332 | fastq.gz | 2.5 GB |
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| EGAF50000502333 | fastq.gz | 3.1 GB |
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| EGAF50000502334 | fastq.gz | 3.2 GB |
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| EGAF50000502335 | fastq.gz | 3.6 GB |
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| EGAF50000502336 | fastq.gz | 3.8 GB |
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| EGAF50000502337 | fastq.gz | 2.7 GB |
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| EGAF50000502338 | fastq.gz | 2.8 GB |
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| EGAF50000502339 | fastq.gz | 4.2 GB |
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| EGAF50000502340 | fastq.gz | 4.4 GB |
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| EGAF50000502341 | fastq.gz | 2.8 GB |
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| EGAF50000502342 | fastq.gz | 2.9 GB |
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| EGAF50000502343 | fastq.gz | 2.8 GB |
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| EGAF50000502344 | fastq.gz | 2.7 GB |
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| EGAF50000502345 | fastq.gz | 3.3 GB |
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| EGAF50000502346 | fastq.gz | 3.4 GB |
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| EGAF50000502347 | fastq.gz | 4.0 GB |
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| EGAF50000502348 | fastq.gz | 4.0 GB |
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| EGAF50000502349 | fastq.gz | 3.5 GB |
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| EGAF50000502350 | fastq.gz | 3.7 GB |
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| EGAF50000502351 | fastq.gz | 4.7 GB |
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| EGAF50000502352 | fastq.gz | 4.8 GB |
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| EGAF50000502353 | fastq.gz | 2.8 GB |
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| EGAF50000502354 | fastq.gz | 2.8 GB |
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| EGAF50000502355 | fastq.gz | 2.3 GB |
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| EGAF50000502356 | fastq.gz | 2.3 GB |
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| EGAF50000502357 | fastq.gz | 2.7 GB |
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| EGAF50000502358 | fastq.gz | 2.7 GB |
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| EGAF50000502359 | fastq.gz | 2.5 GB |
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| EGAF50000502360 | fastq.gz | 2.5 GB |
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| EGAF50000502361 | fastq.gz | 2.7 GB |
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| EGAF50000502362 | fastq.gz | 2.7 GB |
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| EGAF50000502363 | fastq.gz | 2.5 GB |
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| EGAF50000502364 | fastq.gz | 2.5 GB |
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| EGAF50000502365 | fastq.gz | 3.6 GB |
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| EGAF50000502366 | fastq.gz | 3.7 GB |
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| 48 Files (158.5 GB) | ||||