Germline Pan-cancer Lynch syndrome sequencing dataset from India
The dataset consists of germline whole exome sequencing data generated on the Illumina NovaSeq X Plus platform for 48 patients with MSI-high/ MMRd gastro-intestinal and genito-urinary cancers, in order to detect Lynch syndrome.
- 09/12/2025
- 48 samples
- DAC: EGAC00001002576
- Technology: Illumina NovaSeq X Plus
FRIGE IHG Data Access Committee reviews the aim and methodology of the proposed study for which access to anonymised data is requested.
Detailed policy document and data access agreement will be shared once the proposed study is reviewed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001449 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF50000506135 | fastq.gz | 2.8 GB |
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| EGAF50000506136 | fastq.gz | 2.7 GB |
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| EGAF50000506137 | fastq.gz | 2.3 GB |
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| EGAF50000506138 | fastq.gz | 2.3 GB |
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| EGAF50000506139 | fastq.gz | 2.3 GB |
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| EGAF50000506140 | fastq.gz | 2.3 GB |
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| EGAF50000506141 | fastq.gz | 3.1 GB |
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| EGAF50000506142 | fastq.gz | 3.0 GB |
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| EGAF50000506143 | fastq.gz | 2.6 GB |
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| EGAF50000506144 | fastq.gz | 2.6 GB |
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| EGAF50000506145 | fastq.gz | 2.0 GB |
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| EGAF50000506146 | fastq.gz | 2.1 GB |
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| EGAF50000506147 | fastq.gz | 2.0 GB |
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| EGAF50000506148 | fastq.gz | 1.9 GB |
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| EGAF50000506149 | fastq.gz | 2.2 GB |
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| EGAF50000506150 | fastq.gz | 2.2 GB |
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| EGAF50000506151 | fastq.gz | 3.1 GB |
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| EGAF50000506152 | fastq.gz | 3.2 GB |
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| EGAF50000506153 | fastq.gz | 2.9 GB |
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| EGAF50000506154 | fastq.gz | 2.9 GB |
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| EGAF50000506155 | fastq.gz | 2.2 GB |
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| EGAF50000506156 | fastq.gz | 2.2 GB |
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| EGAF50000506157 | fastq.gz | 4.0 GB |
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| EGAF50000506158 | fastq.gz | 3.9 GB |
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| EGAF50000506159 | fastq.gz | 2.6 GB |
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| EGAF50000506160 | fastq.gz | 2.6 GB |
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| EGAF50000506161 | fastq.gz | 2.1 GB |
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| EGAF50000506162 | fastq.gz | 2.1 GB |
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| EGAF50000506163 | fastq.gz | 2.4 GB |
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| EGAF50000506164 | fastq.gz | 2.3 GB |
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| EGAF50000506165 | fastq.gz | 1.9 GB |
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| EGAF50000506166 | fastq.gz | 1.9 GB |
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| EGAF50000506167 | fastq.gz | 1.9 GB |
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| EGAF50000506168 | fastq.gz | 1.9 GB |
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| EGAF50000506169 | fastq.gz | 1.9 GB |
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| EGAF50000506170 | fastq.gz | 1.8 GB |
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| EGAF50000506171 | fastq.gz | 1.8 GB |
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| EGAF50000506172 | fastq.gz | 1.8 GB |
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| EGAF50000506173 | fastq.gz | 3.9 GB |
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| EGAF50000506174 | fastq.gz | 4.0 GB |
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| EGAF50000506175 | fastq.gz | 2.4 GB |
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| EGAF50000506176 | fastq.gz | 2.4 GB |
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| EGAF50000506177 | fastq.gz | 2.1 GB |
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| EGAF50000506178 | fastq.gz | 2.2 GB |
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| EGAF50000506179 | fastq.gz | 2.2 GB |
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| EGAF50000506180 | fastq.gz | 2.2 GB |
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| EGAF50000506181 | fastq.gz | 4.6 GB |
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| EGAF50000506182 | fastq.gz | 4.8 GB |
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| EGAF50000506183 | fastq.gz | 2.7 GB |
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| EGAF50000506184 | fastq.gz | 2.9 GB |
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| EGAF50000506185 | fastq.gz | 2.2 GB |
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| EGAF50000506186 | fastq.gz | 2.1 GB |
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| EGAF50000506187 | fastq.gz | 2.7 GB |
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| EGAF50000506188 | fastq.gz | 2.8 GB |
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| EGAF50000506189 | fastq.gz | 2.6 GB |
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| EGAF50000506190 | fastq.gz | 2.6 GB |
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| EGAF50000506191 | fastq.gz | 2.4 GB |
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| EGAF50000506192 | fastq.gz | 2.4 GB |
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| EGAF50000506193 | fastq.gz | 2.3 GB |
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| EGAF50000506194 | fastq.gz | 2.4 GB |
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| EGAF50000506195 | fastq.gz | 2.2 GB |
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| EGAF50000506196 | fastq.gz | 2.1 GB |
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| EGAF50000506197 | fastq.gz | 2.5 GB |
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| EGAF50000506198 | fastq.gz | 2.4 GB |
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| EGAF50000506199 | fastq.gz | 1.9 GB |
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| EGAF50000506200 | fastq.gz | 1.9 GB |
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| EGAF50000506201 | fastq.gz | 2.2 GB |
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| EGAF50000506202 | fastq.gz | 2.2 GB |
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| EGAF50000506203 | fastq.gz | 2.3 GB |
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| EGAF50000506204 | fastq.gz | 2.2 GB |
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| EGAF50000506205 | fastq.gz | 3.6 GB |
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| EGAF50000506206 | fastq.gz | 3.7 GB |
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| EGAF50000506207 | fastq.gz | 2.2 GB |
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| EGAF50000506208 | fastq.gz | 2.2 GB |
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| EGAF50000506209 | fastq.gz | 2.4 GB |
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| EGAF50000506210 | fastq.gz | 2.4 GB |
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| EGAF50000506211 | fastq.gz | 389.7 MB |
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| EGAF50000506212 | fastq.gz | 1.1 GB |
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| EGAF50000506213 | fastq.gz | 2.8 GB |
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| EGAF50000506214 | fastq.gz | 2.7 GB |
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| EGAF50000506215 | fastq.gz | 3.2 GB |
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| EGAF50000506216 | fastq.gz | 3.2 GB |
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| EGAF50000506217 | fastq.gz | 1.9 GB |
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| EGAF50000506218 | fastq.gz | 1.9 GB |
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| EGAF50000506219 | fastq.gz | 2.4 GB |
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| EGAF50000506220 | fastq.gz | 2.3 GB |
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| EGAF50000506221 | fastq.gz | 2.4 GB |
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| EGAF50000506222 | fastq.gz | 2.4 GB |
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| EGAF50000506223 | fastq.gz | 2.1 GB |
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| EGAF50000506224 | fastq.gz | 2.2 GB |
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| EGAF50000506225 | fastq.gz | 3.6 GB |
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| EGAF50000506226 | fastq.gz | 3.6 GB |
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| EGAF50000506227 | fastq.gz | 2.3 GB |
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| EGAF50000506228 | fastq.gz | 2.3 GB |
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| EGAF50000506229 | fastq.gz | 2.4 GB |
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| EGAF50000506230 | fastq.gz | 2.3 GB |
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| 96 Files (238.7 GB) | ||||