About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS data of paediatric BCR::ABL1 acute lymphoblastic leukemia

The dataset includes FASTQ and CRAM files from diagnostic and matched remission (control) samples of one BCR::ABL1 ALL patient (ALLT-399). Sequencing library was made using PCR free-based WGS library preparation (PCR-), using Novogene NGS DNA Library Prep Set Kit (Cat No. PT004). Both diagnostic (90x) and remission (30x) samples were sequenced using NovaSeqX Plus.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001512 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000520169 fq.gz 8.5 GB
EGAF50000520170 fq.gz 13.0 GB
EGAF50000520171 cram 7.2 GB
EGAF50000520172 crai 797.4 kB
EGAF50000520173 fq.gz 8.5 GB
EGAF50000520174 fq.gz 13.0 GB
EGAF50000520175 fq.gz 8.0 GB
EGAF50000520176 fq.gz 7.9 GB
EGAF50000520177 fq.gz 4.5 GB
EGAF50000520178 fq.gz 17.6 GB
EGAF50000520179 fq.gz 4.7 GB
EGAF50000520180 fq.gz 17.6 GB
EGAF50000520181 fq.gz 20.4 GB
EGAF50000520182 fq.gz 20.5 GB
EGAF50000520183 fq.gz 15.4 GB
EGAF50000520184 fq.gz 15.4 GB
EGAF50000520185 cram 24.0 GB
EGAF50000520186 crai 2.4 MB
18 Files (206.1 GB)