About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNAseq of fresh CRC punch biopsies

The dataset includes single-cell RNAseq data generated by Plate-Seq technology from scDiscoveries. The dataset contains samples from a total of 5 different early CRC biobank patients (pt5, pt11, pt13, pt14, pt16) from 4 different sequencing runs. Punch biopsies of different regions of the tumor (Core, Invasive front and, if available, Adenoma) were FACS sorted onto plates prior to sequencing.

Request Access

DUO:0000007
version: 2021-02-23

disease specific research

This data use permission indicates that use is allowed provided it is related to the specified disease.

ModifiersMONDO:0005575

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers

Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers containing RNASeq, scRNASeq and WGS data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001532 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000551609 fastq.gz 720.4 MB
EGAF50000551610 fastq.gz 325.2 MB
EGAF50000551611 fastq.gz 316.3 MB
EGAF50000551612 fastq.gz 704.0 MB
EGAF50000551613 fastq.gz 324.4 MB
EGAF50000551614 fastq.gz 720.8 MB
EGAF50000551615 fastq.gz 317.5 MB
EGAF50000551616 fastq.gz 708.0 MB
EGAF50000551617 fastq.gz 290.3 MB
EGAF50000551618 fastq.gz 644.7 MB
EGAF50000551619 fastq.gz 628.4 MB
EGAF50000551620 fastq.gz 281.7 MB
EGAF50000551621 fastq.gz 289.3 MB
EGAF50000551622 fastq.gz 644.3 MB
EGAF50000551623 fastq.gz 282.5 MB
EGAF50000551624 fastq.gz 631.3 MB
EGAF50000551625 fastq.gz 284.7 MB
EGAF50000551626 fastq.gz 653.1 MB
EGAF50000551627 fastq.gz 276.4 MB
EGAF50000551628 fastq.gz 636.4 MB
EGAF50000551629 fastq.gz 284.0 MB
EGAF50000551630 fastq.gz 653.2 MB
EGAF50000551631 fastq.gz 277.5 MB
EGAF50000551632 fastq.gz 639.6 MB
EGAF50000551733 fastq.gz 292.8 MB
EGAF50000551734 fastq.gz 125.2 MB
EGAF50000551735 fastq.gz 122.7 MB
EGAF50000551736 fastq.gz 286.8 MB
EGAF50000551737 fastq.gz 127.8 MB
EGAF50000551738 fastq.gz 299.5 MB
EGAF50000551739 fastq.gz 125.4 MB
EGAF50000551740 fastq.gz 292.9 MB
EGAF50000551741 fastq.gz 328.7 MB
EGAF50000551742 fastq.gz 141.9 MB
EGAF50000551743 fastq.gz 322.1 MB
EGAF50000551744 fastq.gz 139.1 MB
EGAF50000551745 fastq.gz 144.8 MB
EGAF50000551746 fastq.gz 336.1 MB
EGAF50000551747 fastq.gz 329.2 MB
EGAF50000551748 fastq.gz 142.2 MB
EGAF50000551749 fastq.gz 117.3 MB
EGAF50000551750 fastq.gz 272.3 MB
EGAF50000551751 fastq.gz 266.8 MB
EGAF50000551752 fastq.gz 115.0 MB
EGAF50000551753 fastq.gz 119.7 MB
EGAF50000551754 fastq.gz 278.6 MB
EGAF50000551755 fastq.gz 117.6 MB
EGAF50000551756 fastq.gz 272.7 MB
EGAF50000551757 fastq.gz 367.5 MB
EGAF50000551758 fastq.gz 808.0 MB
EGAF50000551759 fastq.gz 369.0 MB
EGAF50000551760 fastq.gz 810.5 MB
EGAF50000551761 fastq.gz 370.4 MB
EGAF50000551762 fastq.gz 814.5 MB
EGAF50000551763 fastq.gz 362.9 MB
EGAF50000551764 fastq.gz 795.1 MB
EGAF50000551765 fastq.gz 313.7 MB
EGAF50000551766 fastq.gz 696.0 MB
EGAF50000551767 fastq.gz 671.7 MB
EGAF50000551768 fastq.gz 303.6 MB
EGAF50000551769 fastq.gz 305.2 MB
EGAF50000551770 fastq.gz 676.2 MB
EGAF50000551771 fastq.gz 302.7 MB
EGAF50000551772 fastq.gz 670.3 MB
EGAF50000551773 fastq.gz 294.1 MB
EGAF50000551774 fastq.gz 628.8 MB
EGAF50000551775 fastq.gz 621.8 MB
EGAF50000551776 fastq.gz 291.2 MB
EGAF50000551777 fastq.gz 294.1 MB
EGAF50000551778 fastq.gz 627.8 MB
EGAF50000551779 fastq.gz 289.0 MB
EGAF50000551780 fastq.gz 619.2 MB
EGAF50000551781 fastq.gz 264.8 MB
EGAF50000551782 fastq.gz 571.9 MB
EGAF50000551783 fastq.gz 262.9 MB
EGAF50000551784 fastq.gz 568.0 MB
EGAF50000551785 fastq.gz 264.9 MB
EGAF50000551786 fastq.gz 571.7 MB
EGAF50000551787 fastq.gz 261.0 MB
EGAF50000551788 fastq.gz 565.9 MB
EGAF50000551789 fastq.gz 252.8 MB
EGAF50000551790 fastq.gz 552.9 MB
EGAF50000551791 fastq.gz 250.9 MB
EGAF50000551792 fastq.gz 549.5 MB
EGAF50000551793 fastq.gz 253.8 MB
EGAF50000551794 fastq.gz 557.0 MB
EGAF50000551795 fastq.gz 249.9 MB
EGAF50000551796 fastq.gz 549.8 MB
EGAF50000551797 fastq.gz 247.2 MB
EGAF50000551798 fastq.gz 545.2 MB
EGAF50000551799 fastq.gz 543.9 MB
EGAF50000551800 fastq.gz 245.9 MB
EGAF50000551801 fastq.gz 248.5 MB
EGAF50000551802 fastq.gz 550.2 MB
EGAF50000551803 fastq.gz 244.7 MB
EGAF50000551804 fastq.gz 543.5 MB
EGAF50000551805 fastq.gz 219.6 MB
EGAF50000551806 fastq.gz 478.5 MB
EGAF50000551807 fastq.gz 216.4 MB
EGAF50000551808 fastq.gz 471.7 MB
EGAF50000551809 fastq.gz 221.1 MB
EGAF50000551810 fastq.gz 481.0 MB
EGAF50000551811 fastq.gz 474.2 MB
EGAF50000551812 fastq.gz 217.2 MB
EGAF50000551813 fastq.gz 249.2 MB
EGAF50000551814 fastq.gz 545.2 MB
EGAF50000551815 fastq.gz 245.6 MB
EGAF50000551816 fastq.gz 537.7 MB
EGAF50000551817 fastq.gz 548.3 MB
EGAF50000551818 fastq.gz 251.0 MB
EGAF50000551819 fastq.gz 246.6 MB
EGAF50000551820 fastq.gz 541.2 MB
EGAF50000551821 fastq.gz 475.8 MB
EGAF50000551822 fastq.gz 220.0 MB
EGAF50000551823 fastq.gz 216.3 MB
EGAF50000551824 fastq.gz 467.9 MB
EGAF50000551825 fastq.gz 221.4 MB
EGAF50000551826 fastq.gz 477.9 MB
EGAF50000551827 fastq.gz 470.9 MB
EGAF50000551828 fastq.gz 217.2 MB
EGAF50000551829 fastq.gz 294.7 MB
EGAF50000551830 fastq.gz 692.9 MB
EGAF50000551831 fastq.gz 680.7 MB
EGAF50000551832 fastq.gz 289.9 MB
EGAF50000551833 fastq.gz 290.5 MB
EGAF50000551834 fastq.gz 683.6 MB
EGAF50000551835 fastq.gz 668.8 MB
EGAF50000551836 fastq.gz 283.6 MB
128 Files (51.3 GB)