Whole genome sequencing of patient derived cancer and normal organoids
The dataset includes whole genome sequencing data generated from regional patient derived colorectal cancer (CRC) and adjacent normal tissue organoids. The dataset contains samples from a total of 10 different early CRC biobank patients from 2 different sequencing runs.
- 27/01/2026
- 23 samples
- DAC: EGAC00001000432
- Technology: Illumina NovaSeq 6000
DUO:0000007 version: 2021-02-23
disease specific research
This data use permission indicates that use is allowed provided it is related to the specified disease.
ModifiersMONDO:0005575
DUO:0000018 version: 2021-02-23
not for profit, non commercial use only
This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
DUO:0000021 version: 2021-02-23
ethics approval required
This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.
Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers
Policy for Emergence of oncofetal plasticity is ubiquitous in early colorectal cancers containing RNASeq, scRNASeq and WGS data.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000001532 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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| EGAF50000551633 | bam | 30.9 GB |
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| EGAF50000551634 | vcf.gz | 2.3 MB |
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| EGAF50000551635 | vcf.gz | 3.2 MB |
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| EGAF50000551636 | vcf.gz | 2.5 MB |
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| EGAF50000551637 | vcf.gz | 2.3 MB |
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| EGAF50000551638 | vcf.gz | 1.7 MB |
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| EGAF50000551639 | vcf.gz | 2.0 MB |
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| EGAF50000551640 | vcf.gz | 1.4 MB |
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| EGAF50000551641 | vcf.gz | 1.4 MB |
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| EGAF50000551642 | vcf.gz | 1.5 MB |
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| EGAF50000551837 | bam | 51.3 GB |
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| EGAF50000551838 | bam | 50.3 GB |
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| EGAF50000551839 | bam | 53.8 GB |
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| EGAF50000551840 | bam | 55.4 GB |
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| EGAF50000551841 | bam | 65.4 GB |
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| EGAF50000551842 | bam | 53.9 GB |
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| EGAF50000551843 | bam | 32.7 GB |
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| EGAF50000551844 | bam | 70.2 GB |
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| EGAF50000551845 | bam | 76.7 GB |
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| EGAF50000551846 | bam | 62.1 GB |
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| EGAF50000551847 | bam | 57.2 GB |
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| EGAF50000551848 | bam | 59.0 GB |
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| EGAF50000551849 | bam | 33.6 GB |
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| EGAF50000551850 | bam | 30.7 GB |
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| EGAF50000551851 | bam | 28.0 GB |
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| EGAF50000551852 | bam | 28.4 GB |
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| EGAF50000551853 | bam | 31.7 GB |
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| EGAF50000551854 | bam | 25.6 GB |
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| EGAF50000551855 | bam | 28.5 GB |
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| EGAF50000551856 | bam | 29.3 GB |
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| EGAF50000551857 | bam | 29.3 GB |
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| EGAF50000551858 | bam | 29.0 GB |
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| EGAF50000551859 | vcf.gz | 2.0 MB |
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| EGAF50000551860 | vcf.gz | 2.0 MB |
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| EGAF50000551861 | vcf.gz | 131.8 MB |
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| EGAF50000551862 | vcf.gz | 149.4 MB |
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| EGAF50000551863 | vcf.gz | 2.2 MB |
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| EGAF50000551864 | vcf.gz | 3.7 MB |
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| EGAF50000551865 | vcf.gz | 1.8 MB |
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| 39 Files (1.0 TB) | ||||