About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Bulk RNAseq FASTQ files of WNT7B reporter PDAC organoids (P28 and P40) sorted by mNeonGreen high and low

This dataset contains raw FASTQ files from bulk RNA sequencing of two patient-derived PDAC organoid lines (P28 and P40) carrying a WNT7B reporter knock-in. Organoids were sorted into mNeonGreen high (WNT-high) and low (WNT-low) populations, with three biological replicates per sorted population. RNA was extracted using the Qiagen QiaSymphony SP system, and libraries were prepared with the Illumina Truseq stranded polyA kit. Sequencing was performed on an Illumina NextSeq2000 platform using single-end 50bp reads. Quality control was conducted with FastQC, and reads were trimmed with TrimGalore as appropriate. Data are controlled-access and intended for transcriptomic analysis of WNT7B expression-dependent transcriptional programs in PDAC organoids.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

Data Access Policy for Maurice Lab

Data access is restricted to bona fide researchers for research purposes only. Access requests will be reviewed by the Data Access Committee. Applicants must agree to the Data Access Agreement, including keeping the data secure and not sharing it with unauthorized third parties.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001543 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000558946 fastq.gz 242.8 MB
EGAF50000558947 fastq.gz 342.5 MB
EGAF50000558948 fastq.gz 353.5 MB
EGAF50000558954 fastq.gz 237.9 MB
EGAF50000558955 fastq.gz 373.0 MB
EGAF50000558956 fastq.gz 376.0 MB
EGAF50000558957 fastq.gz 957.6 MB
EGAF50000558958 fastq.gz 462.7 MB
EGAF50000558959 fastq.gz 325.8 MB
EGAF50000558960 fastq.gz 1.0 GB
EGAF50000558961 fastq.gz 815.9 MB
EGAF50000558962 fastq.gz 831.9 MB
EGAF50000558963 fastq.gz 955.3 MB
EGAF50000558964 fastq.gz 284.9 MB
EGAF50000558965 fastq.gz 284.6 MB
EGAF50000558966 fastq.gz 951.2 MB
EGAF50000558967 fastq.gz 957.2 MB
EGAF50000558968 fastq.gz 770.0 MB
EGAF50000558969 fastq.gz 992.9 MB
EGAF50000558970 fastq.gz 243.2 MB
EGAF50000558971 fastq.gz 397.9 MB
EGAF50000558972 fastq.gz 278.2 MB
EGAF50000558973 fastq.gz 293.5 MB
EGAF50000558974 fastq.gz 905.4 MB
EGAF50000558975 fastq.gz 909.1 MB
EGAF50000558976 fastq.gz 1.0 GB
EGAF50000558977 fastq.gz 410.3 MB
EGAF50000558978 fastq.gz 280.8 MB
EGAF50000558979 fastq.gz 1.0 GB
EGAF50000558980 fastq.gz 286.2 MB
EGAF50000558981 fastq.gz 451.4 MB
EGAF50000558982 fastq.gz 930.1 MB
EGAF50000558983 fastq.gz 934.4 MB
EGAF50000558984 fastq.gz 823.1 MB
EGAF50000558989 fastq.gz 458.6 MB
EGAF50000558990 fastq.gz 329.0 MB
EGAF50000558991 fastq.gz 819.3 MB
EGAF50000558992 fastq.gz 472.1 MB
EGAF50000558993 fastq.gz 323.9 MB
EGAF50000558994 fastq.gz 831.2 MB
EGAF50000558995 fastq.gz 400.5 MB
EGAF50000558996 fastq.gz 968.1 MB
EGAF50000558997 fastq.gz 301.4 MB
EGAF50000558998 fastq.gz 1.0 GB
EGAF50000558999 fastq.gz 861.0 MB
EGAF50000559000 fastq.gz 881.7 MB
EGAF50000559001 fastq.gz 887.6 MB
EGAF50000559002 fastq.gz 288.5 MB
EGAF50000559003 fastq.gz 801.4 MB
EGAF50000559004 fastq.gz 805.6 MB
EGAF50000559021 fastq.gz 964.6 MB
EGAF50000559022 fastq.gz 765.0 MB
EGAF50000559031 fastq.gz 792.4 MB
EGAF50000559032 fastq.gz 836.6 MB
EGAF50000559033 fastq.gz 985.3 MB
EGAF50000559034 fastq.gz 234.9 MB
EGAF50000559035 fastq.gz 362.4 MB
EGAF50000559036 fastq.gz 419.3 MB
EGAF50000559037 fastq.gz 973.6 MB
EGAF50000559038 fastq.gz 865.3 MB
EGAF50000559039 fastq.gz 418.7 MB
EGAF50000559045 fastq.gz 480.5 MB
EGAF50000559046 fastq.gz 320.3 MB
EGAF50000559047 fastq.gz 949.5 MB
EGAF50000559048 fastq.gz 746.0 MB
EGAF50000559049 fastq.gz 749.8 MB
EGAF50000559050 fastq.gz 836.7 MB
EGAF50000559051 fastq.gz 890.2 MB
EGAF50000559052 fastq.gz 888.0 MB
EGAF50000559053 fastq.gz 428.4 MB
EGAF50000559054 fastq.gz 321.8 MB
EGAF50000559055 fastq.gz 469.0 MB
EGAF50000559056 fastq.gz 486.3 MB
EGAF50000559057 fastq.gz 260.3 MB
EGAF50000559058 fastq.gz 264.9 MB
EGAF50000559059 fastq.gz 401.2 MB
EGAF50000559068 fastq.gz 786.2 MB
EGAF50000559069 fastq.gz 852.2 MB
EGAF50000559070 fastq.gz 856.4 MB
EGAF50000559074 fastq.gz 893.8 MB
EGAF50000559075 fastq.gz 888.0 MB
EGAF50000559076 fastq.gz 393.5 MB
EGAF50000559077 fastq.gz 335.1 MB
EGAF50000559086 fastq.gz 780.9 MB
EGAF50000559087 fastq.gz 776.0 MB
EGAF50000559088 fastq.gz 402.7 MB
EGAF50000559089 fastq.gz 410.2 MB
EGAF50000559090 fastq.gz 327.9 MB
EGAF50000559091 fastq.gz 488.8 MB
EGAF50000559092 fastq.gz 815.1 MB
EGAF50000559093 fastq.gz 819.3 MB
EGAF50000559094 fastq.gz 285.8 MB
EGAF50000559095 fastq.gz 405.2 MB
EGAF50000559096 fastq.gz 300.6 MB
EGAF50000559097 fastq.gz 421.9 MB
EGAF50000559098 fastq.gz 828.7 MB
96 Files (59.3 GB)