WES of scHCCOs
WES analysis of Hepatocellular Carcinoma Organoids (HCCOs), and their single cell derived outgrowths. We asses variants and Copy Number Variations after single cell bottle-necks.
- 30/10/2026
- 30 samples
- DAC: EGAC50000000917
- Technology: Illumina NovaSeq X
- Archive: European Genome-phenome Archive (EGA)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000002199 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF50001049134 | bam | 11.3 GB |
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| EGAF50001049135 | bam | 3.1 GB |
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| EGAF50001049136 | bam | 3.0 GB |
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| EGAF50001049137 | bam | 3.6 GB |
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| EGAF50001049138 | bam | 3.8 GB |
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| EGAF50001049139 | bam | 3.7 GB |
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| EGAF50001049140 | bam | 3.2 GB |
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| EGAF50001049141 | bam | 3.6 GB |
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| EGAF50001049142 | bam | 3.7 GB |
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| EGAF50001049143 | bam | 3.5 GB |
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| EGAF50001049144 | bam | 3.7 GB |
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| EGAF50001049145 | bam | 3.6 GB |
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| EGAF50001049146 | bam | 3.5 GB |
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| EGAF50001049147 | bam | 3.6 GB |
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| EGAF50001049148 | bam | 3.7 GB |
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| EGAF50001049149 | bam | 3.7 GB |
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| EGAF50001049150 | bam | 3.6 GB |
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| EGAF50001049151 | bam | 3.7 GB |
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| EGAF50001049152 | bam | 3.8 GB |
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| EGAF50001049153 | bam | 3.4 GB |
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| EGAF50001049154 | bam | 3.6 GB |
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| EGAF50001049155 | bam | 3.8 GB |
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| EGAF50001049156 | bam | 3.7 GB |
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| EGAF50001049157 | bam | 3.8 GB |
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| EGAF50001049158 | bam | 3.7 GB |
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| EGAF50001049159 | bam | 3.8 GB |
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| EGAF50001049160 | bam | 3.7 GB |
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| EGAF50001049161 | bam | 3.7 GB |
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| EGAF50001049162 | bam | 3.5 GB |
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| EGAF50001049163 | bam | 3.5 GB |
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| EGAF50001049164 | bai | 3.0 MB |
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| EGAF50001049165 | bai | 2.9 MB |
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| EGAF50001049166 | bai | 2.9 MB |
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| EGAF50001049167 | bai | 3.0 MB |
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| EGAF50001049168 | bai | 3.0 MB |
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| EGAF50001049169 | bai | 3.0 MB |
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| EGAF50001049170 | bai | 3.0 MB |
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| EGAF50001049171 | bai | 3.0 MB |
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| EGAF50001049172 | bai | 3.0 MB |
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| EGAF50001049173 | bai | 3.0 MB |
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| EGAF50001049174 | bai | 3.0 MB |
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| EGAF50001049175 | bai | 3.0 MB |
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| EGAF50001049176 | bai | 3.0 MB |
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| EGAF50001049177 | bai | 3.0 MB |
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| EGAF50001049178 | bai | 3.0 MB |
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| EGAF50001049179 | bai | 3.0 MB |
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| EGAF50001049180 | bai | 3.0 MB |
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| EGAF50001049181 | bai | 3.0 MB |
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| EGAF50001049182 | bai | 3.0 MB |
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| EGAF50001049183 | bai | 3.0 MB |
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| EGAF50001049184 | bai | 3.0 MB |
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| EGAF50001049185 | bai | 3.0 MB |
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| EGAF50001049186 | bai | 3.0 MB |
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| EGAF50001049187 | bai | 3.0 MB |
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| EGAF50001049188 | bai | 3.0 MB |
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| EGAF50001049189 | bai | 3.0 MB |
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| EGAF50001049190 | bai | 3.0 MB |
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| EGAF50001049191 | bai | 3.0 MB |
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| EGAF50001049192 | bai | 3.0 MB |
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| EGAF50001049193 | bai | 3.0 MB |
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| EGAF50001049194 | bed | 6.5 MB |
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| EGAF50001049195 | tsv | 366.2 kB |
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| 62 Files (115.5 GB) | ||||
