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WES of scHCCOs

WES analysis of Hepatocellular Carcinoma Organoids (HCCOs), and their single cell derived outgrowths. We asses variants and Copy Number Variations after single cell bottle-necks.

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Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)

Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002199 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50001049134 bam 11.3 GB
EGAF50001049135 bam 3.1 GB
EGAF50001049136 bam 3.0 GB
EGAF50001049137 bam 3.6 GB
EGAF50001049138 bam 3.8 GB
EGAF50001049139 bam 3.7 GB
EGAF50001049140 bam 3.2 GB
EGAF50001049141 bam 3.6 GB
EGAF50001049142 bam 3.7 GB
EGAF50001049143 bam 3.5 GB
EGAF50001049144 bam 3.7 GB
EGAF50001049145 bam 3.6 GB
EGAF50001049146 bam 3.5 GB
EGAF50001049147 bam 3.6 GB
EGAF50001049148 bam 3.7 GB
EGAF50001049149 bam 3.7 GB
EGAF50001049150 bam 3.6 GB
EGAF50001049151 bam 3.7 GB
EGAF50001049152 bam 3.8 GB
EGAF50001049153 bam 3.4 GB
EGAF50001049154 bam 3.6 GB
EGAF50001049155 bam 3.8 GB
EGAF50001049156 bam 3.7 GB
EGAF50001049157 bam 3.8 GB
EGAF50001049158 bam 3.7 GB
EGAF50001049159 bam 3.8 GB
EGAF50001049160 bam 3.7 GB
EGAF50001049161 bam 3.7 GB
EGAF50001049162 bam 3.5 GB
EGAF50001049163 bam 3.5 GB
EGAF50001049164 bai 3.0 MB
EGAF50001049165 bai 2.9 MB
EGAF50001049166 bai 2.9 MB
EGAF50001049167 bai 3.0 MB
EGAF50001049168 bai 3.0 MB
EGAF50001049169 bai 3.0 MB
EGAF50001049170 bai 3.0 MB
EGAF50001049171 bai 3.0 MB
EGAF50001049172 bai 3.0 MB
EGAF50001049173 bai 3.0 MB
EGAF50001049174 bai 3.0 MB
EGAF50001049175 bai 3.0 MB
EGAF50001049176 bai 3.0 MB
EGAF50001049177 bai 3.0 MB
EGAF50001049178 bai 3.0 MB
EGAF50001049179 bai 3.0 MB
EGAF50001049180 bai 3.0 MB
EGAF50001049181 bai 3.0 MB
EGAF50001049182 bai 3.0 MB
EGAF50001049183 bai 3.0 MB
EGAF50001049184 bai 3.0 MB
EGAF50001049185 bai 3.0 MB
EGAF50001049186 bai 3.0 MB
EGAF50001049187 bai 3.0 MB
EGAF50001049188 bai 3.0 MB
EGAF50001049189 bai 3.0 MB
EGAF50001049190 bai 3.0 MB
EGAF50001049191 bai 3.0 MB
EGAF50001049192 bai 3.0 MB
EGAF50001049193 bai 3.0 MB
EGAF50001049194 bed 6.5 MB
EGAF50001049195 tsv 366.2 kB
62 Files (115.5 GB)