Search Results - EGA European Genome-Phenome Archive

DLP+ Single Cell Genomic Library A98180

DLP+ Single Cell Genomic Library A98180 for Diffuse large B-cell lymphoma patient sample TFRI_Pair_13_DLBCL

Dataset EGAD00001010240

DLP+ Single Cell Genomic Library A98193

DLP+ Single Cell Genomic Library A98193 for Follicular lymphoma patient sample TFRI_Pair_6_FL

Dataset EGAD00001010241

DLP+ Single Cell Genomic Library A98203

DLP+ Single Cell Genomic Library A98203 for Diffuse large B-cell lymphoma patient sample TFRIPAIR8_DLBCL

Dataset EGAD00001010242

DLP+ Single Cell Genomic Library A98205

DLP+ Single Cell Genomic Library A98205 for Follicular lymphoma patient sample TFRIPAIR9_FL

Dataset EGAD00001010243

DLP+ Single Cell Genomic Library A98208

DLP+ Single Cell Genomic Library A98208 for Diffuse large B-cell lymphoma patient sample TFRIPAIR10_DLBCL

Dataset EGAD00001010244

DLP+ Single Cell Genomic Library A98221A

DLP+ Single Cell Genomic Library A98221A for Follicular lymphoma patient sample TFRIPAIR5_FL

Dataset EGAD00001010245

DLP+ Single Cell Genomic Library A98225

DLP+ Single Cell Genomic Library A98225 for Diffuse large B-cell lymphoma patient sample TFRIPAIR12_DLBCL_rel

Dataset EGAD00001010246

DLP+ Single Cell Genomic Library A98288

DLP+ Single Cell Genomic Library A98288 for Follicular lymphoma patient sample TFRIPAIR2_FL

Dataset EGAD00001010247

DLP+ Single Cell Genomic Library A98297

DLP+ Single Cell Genomic Library A98297 for Follicular lymphoma patient sample TFRIPAIR3_FL

Dataset EGAD00001010248

DLP+ Single Cell Genomic Library A98167

DLP+ Single Cell Genomic Library A98167 for Diffuse large B-cell lymphoma patient sample TFRIPAIR4_DLBCL

Dataset EGAD00001010249

Paired RNA-Seq for Sarcoma tumors

Paired RNA-Seq of 199 samples of Sarcoma tumors. The sequencing was done mostly on HiSeq 4000 with Illumina TruSeq Stranded mRNA, ist was also done on NovaSeq 6000 using the same kit. Very few samples were sequenced on HiSeq X Ten with Illumina TruSeq RNA or Illumina TruSeq Stranded mRNA.

Dataset EGAD00001010256

Dataset for Sarcoma-WGS linked from study EGAS00001004813

Sequencing data of 77 sarcoma tumor and control runs, which were uploaded to EGAS00001004813. The sequencing was always paired.

Dataset EGAD00001010257

Dataset for Sarcoma-WES linked from study EGAS00001004813

Sequencing data of 144 sarcoma tumor and control runs, which were uploaded to EGAS00001004813. The sequencing was always paired.

Dataset EGAD00001010258

lymphoma plasma cfRNA

Dataset contains total RNA sequencing data from plasma of 65 different human donors: 30 diffuse large B-cell lymphoma (DLBCL) and 13 primary mediastinal large B-cell lymphoma (PMBCL) patients, and 22 cancer-free controls. Samples were sequenced on a NovaSeq 6000 and are provided in FASTQ format.

Dataset EGAD00001010259

Raw data for "Spatial and temporal transcriptomics of medulloblastoma with chromothripsis identifies multiple genetic clones that resist to treatment and lead to relapse"

FASTQ files from Illumina sequencing of 10x Visium experiments.

Dataset EGAD00001010260

Paired Exome sequencing of Sarcoma tumor and control

Paired Exome sequencing of Sarcoma tumor and control of 10 samples (5 tumor/control pairs). The sequencing was done on Illumina Hiseq 4000 and Agilent Sureselect V5+UTRs kit.

Dataset EGAD00001010278

Dataset for Sarcoma RNA sequencing linked from study EGAS00001004813

Sequencing data of 410 sarcoma tumor runs, which were uploaded to EGAS00001004813. The sequencing was always paired.

Dataset EGAD00001010276

Paired WGS samples (tumor and control) of one Sarcoma case

Paired WGS samples (tumor and control) of one Sarcoma case. The paired sequencing was done on Hiseq X Ten with Illlumina TruSeq Nano DNA.

Dataset EGAD00001010277

Ither NB in Organoids WXS dataset - Exploring high-throughput drug sensitivity testing in neuroblastoma cell lines and patient-derived tumor organoids in the era of precision medicine

Ither NB in Organoids WXS dataset - We aimed to launch an online repository integrating genomics and transcriptomics with high-throughput drug screening (HTS) of nineteen commonly used neuroblastoma cell lines and fourteen generated neuroblastoma patient-derived organoids (NBL-PDOs) to improve identification of molecularly matched therapies and support clinical uptake.

Dataset EGAD00001010281

Ither NB in Organoids WGS dataset - Exploring high-throughput drug sensitivity testing in neuroblastoma cell lines and patient-derived tumor organoids in the era of precision medicine

Ither NB in Organoids WGS dataset - We aimed to launch an online repository integrating genomics and transcriptomics with high-throughput drug screening (HTS) of nineteen commonly used neuroblastoma cell lines and fourteen generated neuroblastoma patient-derived organoids (NBL-PDOs) to improve identification of molecularly matched therapies and support clinical uptake.

Dataset EGAD00001010282

Ither NB in Organoids RNA-Seq dataset - Exploring high-throughput drug sensitivity testing in neuroblastoma cell lines and patient-derived tumor organoids in the era of precision medicine

Ither NB in Organoids RNA-Seq dataset - We aimed to launch an online repository integrating genomics and transcriptomics with high-throughput drug screening (HTS) of nineteen commonly used neuroblastoma cell lines and fourteen generated neuroblastoma patient-derived organoids (NBL-PDOs) to improve identification of molecularly matched therapies and support clinical uptake.

Dataset EGAD00001010283

Bulk RNAseq of Neuroblastoma patient's tumors

This dataset contains 9 bulk RNAseq of neuroblastoma patient's tumors used to compare with derived PDXs and/or single-cell data in the Thirant C et al, Nature Communications, 2023. They were intially produced for the Berlanga P., Cancer Discovery, 2022.

Dataset EGAD00001010287

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