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blog dac dataset documentation study

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Study type

affected sib pairs aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family full transcriptome sequencing gene regulation study interventional longitudinal longitudinal cohort marker discovery metagenomics metastasis methods development nested case-control observational other parent-offspring trios population genomics prospective randomized controlled clinical trial resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence snp array analysis targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs junior ab 5500 genetic analyzer ab 5500xl genetic analyzer ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system ab solid system 3.0 affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 affymetrix cytoscan hd affymetrix expression array affymetrix genechip mirna 4.0 affymetrix human transcriptome array 2.0 affymetrix oncoscan, affymetrix snp6.0, affymetrix cytocan hd affymetrix snp 6.0 affymetrix, thermo fisher scientific affymetrix_snp6 affymetrix_snp6- beadarray complete genomics dnbseq-g400 epic array (illumina) epic_850k genechip hta 2.0 genechip human genome u133 plus 2.0 array genome-wide human snp array 6.0 or the cytoscan hd array gridion hiseq x five hiseq x ten human clariom d arrays human genome u219 array plate humanmethylation450 humanmethylation450k bead chip - genome studio humanomni1 quad beadchip illlimuna epic 450 k illumina illumina 450k illumina 670k (custom illumina human660w-quad) illumina 850k illumina 850k epic array illumina cytosnp illumina epic 450k beadchip assay illumina epic array illumina epic v2.0 illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array v2.0 illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht12.4 illumina humancoreexome-24 array illumina humanexome-12v1_a illumina humanmethylation 450k illumina humanomni2.5 illumina infinium humanmethylation epic beadchip illumina infinium humanmethylation450 (450k) illumina infinium humanmethylation450 beadchip illumina infinium methylationepic array illumina infinium methylationepic beadchip illumina infinium methylationepic beadchip (850 k) illumina infiniumomniexpressexome-8 illumina methylationepic beadchip array illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni express beadchip illumina_humanmethylation450 ilumina infinium humanmethylationepic beadchip array infinium humanmethylation450 beadchip infinium methylation epic beadchip infinium methylationepic beadchip ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl mgiseq-2000rs minion miseq na nanostring expression immunology panel nanostring ncounterâ® pancancer io 360â„¢ nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 pacbio rs pacbio rs ii promethion qexactive plus sequel snp6 unspecified

Phenotypes

[CL:0000786] [CL:0000945] [DOID:0080531] [DOID:0080534] [DOID:0081004] [DOID:0081247] [EFO:0000096] [EFO:0000174] [EFO:0000209] [EFO:0000211] [EFO:0000220] [EFO:0000239] [EFO:0000248] [EFO:0000272] [EFO:0000280] [EFO:0000296] [EFO:0000311] [EFO:0000322] [EFO:0000349] [EFO:0000350] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000519] [EFO:0000571] [EFO:0000574] [EFO:0000621] [EFO:0000622] [EFO:0000623] [EFO:0000624] [EFO:0000625] [EFO:0000632] [EFO:0000637] [EFO:0000681] [EFO:0000691] [EFO:0000702] [EFO:0000708] [EFO:0000761] [EFO:0000980] [EFO:0001378] [EFO:0002618] [EFO:0002787] [EFO:0002824] [EFO:0002916] [EFO:0002918] [EFO:0002939] [EFO:0003942] [EFO:0005406] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005842] [EFO:0005922] [EFO:0006545] [EFO:0007365] [EFO:0008524] [EFO:0008913] [EFO:0008985] [EFO:0008986] [EFO:0008987] [EFO:0008988] [EFO:0008989] [EFO:0008990] [EFO:0008991] [EFO:0008992] [EFO:0008993] [EFO:0009119] [EFO:0009375] [EFO:0009654] [EFO:1000042] [EFO:1000075] [EFO:1000128] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000327] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000453] [EFO:1000796] [EFO:1001469] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001958] [MONDO:0002598] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0003537] [MONDO:0004050] [MONDO:0004301] [MONDO:0004950] [MONDO:0004952] [MONDO:0005005] [MONDO:0005062] [MONDO:0005072] [MONDO:0005184] [MONDO:0006058] [MONDO:0008903] [MONDO:0015760] [MONDO:0016698] [MONDO:0016700] [MONDO:0017043] [MONDO:0017590] [MONDO:0018177] [MONDO:0018874] [MONDO:0018905] [MONDO:0018906] [MONDO:0018908] [MONDO:0019087] [MONDO:0020511] [MONDO:0021335] [MONDO:0100342] [NCIT:C120224] [NCIT:C121793] [NCIT:C121804] [NCIT:C178466] [NCIT:C200033] [NCIT:C2945] [NCIT:C3107] [NCIT:C3359] [NCIT:C3400] [NCIT:C3468] [NCIT:C3745] [NCIT:C3749] [NCIT:C3750] [NCIT:C4244] [NCIT:C4737] [NCIT:C4817] [NCIT:C6481] [NCIT:C6970] [NCIT:C8094] [NCIT:C8971] [NCIT:C9145] [Orphanet:544] [Orphanet:654] [PATO:0000461] [UBERON:0000178] [UBERON:0000966] [UBERON:0001134] [UBERON:0002371]

Duo

0000001 0000004 0000005 0000006 0000007 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

RBtargetedSeq

Retinoblastoma is a rare childhood cancer of the retina. We studied retinoblastoma by Targeted Sequencing.
Dataset EGAD00001008004
10x Genomics Single Cell Gene Expression for SA1051AX1XB01452

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1051 passage 1
Dataset EGAD00001009124
10x Genomics Single Cell Gene Expression for SA1050FX1XB01446

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1050 passage 1
Dataset EGAD00001009125
Genome and transcriptome sequence data from an adenocarcinoma of unknown primary cancer patient

Genome and transcriptome sequence data from an adenocarcinoma of unknown primary cancer patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002611
Genome and transcriptome sequence data from an esophageal adenocarcinoma patient

Genome and transcriptome sequence data from an esophageal adenocarcinoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002612
10x Genomics Single Cell Gene Expression for SA1093CX1XB01917

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1093 passage 1
Dataset EGAD00001009129
10x Genomics Single Cell Gene Expression for SA1053BX1XB01603

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1053 passage 1
Dataset EGAD00001009131
10x Genomics Single Cell Gene Expression for SA1096AX1XB02034

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1096 passage 1
Dataset EGAD00001009132
10x Genomics Single Cell Gene Expression for SA1181AX1XB02700

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1181 passage 1
Dataset EGAD00001009135
10x Genomics Single Cell Gene Expression for SA1096BX1XB02037

10x Genomics Single Cell Gene Expression for High grade serous ovarian carcinoma patient-derived xenograft SA1096 passage 1
Dataset EGAD00001009137

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