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blog dac dataset documentation study

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Study type

affected sib pairs aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family full transcriptome sequencing gene regulation study interventional longitudinal longitudinal cohort marker discovery metagenomics metastasis methods development nested case-control observational other parent-offspring trios population genomics prospective randomized controlled clinical trial resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence snp array analysis targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs junior ab 5500 genetic analyzer ab 5500xl genetic analyzer ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system ab solid system 3.0 affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 affymetrix cytoscan hd affymetrix expression array affymetrix genechip mirna 4.0 affymetrix human transcriptome array 2.0 affymetrix oncoscan, affymetrix snp6.0, affymetrix cytocan hd affymetrix snp 6.0 affymetrix, thermo fisher scientific affymetrix_snp6 affymetrix_snp6- beadarray complete genomics dnbseq-g400 epic array (illumina) epic_850k genechip hta 2.0 genechip human genome u133 plus 2.0 array genome-wide human snp array 6.0 or the cytoscan hd array gridion hiseq x five hiseq x ten human clariom d arrays human genome u219 array plate humanmethylation450 humanmethylation450k bead chip - genome studio humanomni1 quad beadchip illlimuna epic 450 k illumina illumina 450k illumina 670k (custom illumina human660w-quad) illumina 850k illumina 850k epic array illumina cytosnp illumina epic 450k beadchip assay illumina epic array illumina epic v2.0 illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array v2.0 illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht12.4 illumina humancoreexome-24 array illumina humanexome-12v1_a illumina humanmethylation 450k illumina humanomni2.5 illumina infinium humanmethylation epic beadchip illumina infinium humanmethylation450 (450k) illumina infinium humanmethylation450 beadchip illumina infinium methylationepic array illumina infinium methylationepic beadchip illumina infinium methylationepic beadchip (850 k) illumina infiniumomniexpressexome-8 illumina methylationepic beadchip array illumina miseq illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina omni express beadchip illumina_humanmethylation450 ilumina infinium humanmethylationepic beadchip array infinium humanmethylation450 beadchip infinium methylation epic beadchip infinium methylationepic beadchip ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl mgiseq-2000rs minion miseq na nanostring expression immunology panel nanostring ncounterâ® pancancer io 360â„¢ nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 pacbio rs pacbio rs ii promethion qexactive plus sequel snp6 unspecified

Phenotypes

[CL:0000786] [CL:0000945] [DOID:0080531] [DOID:0080534] [DOID:0081004] [DOID:0081247] [EFO:0000096] [EFO:0000174] [EFO:0000209] [EFO:0000211] [EFO:0000220] [EFO:0000239] [EFO:0000248] [EFO:0000272] [EFO:0000280] [EFO:0000296] [EFO:0000311] [EFO:0000322] [EFO:0000349] [EFO:0000350] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000519] [EFO:0000571] [EFO:0000574] [EFO:0000621] [EFO:0000622] [EFO:0000623] [EFO:0000624] [EFO:0000625] [EFO:0000632] [EFO:0000637] [EFO:0000681] [EFO:0000691] [EFO:0000702] [EFO:0000708] [EFO:0000761] [EFO:0000980] [EFO:0001378] [EFO:0002618] [EFO:0002787] [EFO:0002824] [EFO:0002916] [EFO:0002918] [EFO:0002939] [EFO:0003942] [EFO:0005406] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005842] [EFO:0005922] [EFO:0006545] [EFO:0007365] [EFO:0008524] [EFO:0008913] [EFO:0008985] [EFO:0008986] [EFO:0008987] [EFO:0008988] [EFO:0008989] [EFO:0008990] [EFO:0008991] [EFO:0008992] [EFO:0008993] [EFO:0009119] [EFO:0009375] [EFO:0009654] [EFO:1000042] [EFO:1000075] [EFO:1000128] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000327] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000453] [EFO:1000796] [EFO:1001469] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001958] [MONDO:0002598] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0003537] [MONDO:0004050] [MONDO:0004301] [MONDO:0004950] [MONDO:0004952] [MONDO:0005005] [MONDO:0005062] [MONDO:0005072] [MONDO:0005184] [MONDO:0006058] [MONDO:0008903] [MONDO:0015760] [MONDO:0016698] [MONDO:0016700] [MONDO:0017043] [MONDO:0017590] [MONDO:0018177] [MONDO:0018874] [MONDO:0018905] [MONDO:0018906] [MONDO:0018908] [MONDO:0019087] [MONDO:0020511] [MONDO:0021335] [MONDO:0100342] [NCIT:C120224] [NCIT:C121793] [NCIT:C121804] [NCIT:C178466] [NCIT:C200033] [NCIT:C2945] [NCIT:C3107] [NCIT:C3359] [NCIT:C3400] [NCIT:C3468] [NCIT:C3745] [NCIT:C3749] [NCIT:C3750] [NCIT:C4244] [NCIT:C4737] [NCIT:C4817] [NCIT:C6481] [NCIT:C6970] [NCIT:C8094] [NCIT:C8971] [NCIT:C9145] [Orphanet:544] [Orphanet:654] [PATO:0000461] [UBERON:0000178] [UBERON:0000966] [UBERON:0001134] [UBERON:0002371]

Duo

0000001 0000004 0000005 0000006 0000007 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

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Genome and transcriptome sequence data from a metastatic endocervical adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic endocervical adenocarcinoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002987
RNASeq on HiSeq platform of 95 pancreatic adenocarcinoma cases

BAM outputs from RSEM (https://deweylab.github.io/RSEM/) analysis of RNASeq sequencing on HiSeq platform of tumour samples from 95 pancreatic adenocarcinoma cases.
Dataset EGAD00001003298
Genome and transcriptome sequence data from a cholangiocarcinoma patient

Genome and transcriptome sequence data from a cholangiocarcinoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002991
Genome and transcriptome sequence data from a metastatic carcinoma of primary unknown patient

Genome and transcriptome sequence data from a metastatic carcinoma of primary unknown patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002993
Genome and transcriptome sequence data from a metastatic squamous cell carcinoma of anus patient

Genome and transcriptome sequence data from a metastatic squamous cell carcinoma of anus patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002994
Genome and transcriptome sequence data from a carcinosarcoma of the uterus patient

Genome and transcriptome sequence data from a carcinosarcoma of the uterus patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002995
Genome and transcriptome sequence data from a leiomyosarcoma patient

Genome and transcriptome sequence data from a leiomyosarcoma patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001002996
Genome and transcriptome sequence data from a serous carcinoma of fallopian tube patient

Genome and transcriptome sequence data from a serous carcinoma of fallopian tube patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003001
Genome and transcriptome sequence data from a glioblastoma multiforme patient

Genome and transcriptome sequence data from a glioblastoma multiforme patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003004
Genome and transcriptome sequence data from a metastatic adenocarcinoma of the lung patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the lung patient, generated as part of the BC Cancer Agency's Personalized OncoGenomics (POG) study
Dataset EGAD00001003005

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