11976 results for "cancer rna-seq"

in 35.74 milliseconds.

• 4C-seq data of a primary AML with t(3;8)

  The viewpoints used in the 4C-seq data were either the EVI1 promoter or the MYC super-enhancer

  Dataset EGAD00001006818

• Reference epigenome Islet-derived-MSC04 mRNA-Seq data generated from KEP study

  Islet-derived-MSC04 mRNA-Seq paired end data

  Dataset EGAD00001007163

• Reference epigenome IPS-Fibroblast02 h3k27ac ChIP-Seq data generated from KEP study

  IPS-Fibroblast02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007270

• Reference epigenome IPS-ENeuron02 h3k27ac ChIP-Seq data generated from KEP study

  IPS-ENeuron02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007298

• Exome and RNA sequencing of Greenlanders

  This study contains whole exome sequence of 27 Greenlanders and deep RNA sequencing of 17 Greenlanders

  Study EGAS00001002727

• Characterizing the tumor immune microenvironment of ependymomas using targeted gene expression profiles and RNA-sequencing the pros and cons

  RNA sequencing data of a collection of 6 pediatric ependymoma cases

  Study EGAS00001006535

• BLUEPRINT ATAC-seq data for cells in the haematopoietic lineages, from adult and cord blood samples

  BLLUEPRINT ATAC-seq data for cells in the haematopoietic lineages, from adult and cord blood samples.

  Study EGAS00001001596

• ChIP-seq data of Hodgkin lymphoma cell line L-428

  ChIP-seq data (H3K4Me3, H3K27Ac histone modifications) of Hodgkin lymphoma cell line L-428. Samples were processed as previously described (Sud et al., 2018). The files are in bam format, aligned to build 37.

  Study EGAS00001003033

• H3K27ac ChIP-seq of human acute leukemias and healthy donors

  H3K27ac ChIP-seq of 79 primary samples derived from human acute leukemias, namely AML, T-ALL and mixed myeloid/lymphoid leukemias with CpG Island Methylator Phenotype (CIMP). In addition, 4 samples derived from CD34+ cord blood cells of healthy donors were included.

  Dataset EGAD00001011060

• Human and rat skeletal muscle multiomic profiling sequencing data

  Illumina sequencing data (fastq files) representing single-nucleus (sn) ATAC-seq, snRNA-seq, bulk ATAC-seq, and snATACseq+snRNAseq multiomics data from human and rat skeletal muscle samples (19 libraries total). Includes a README file that describes the relationship between libraries, samples, and files.

  Dataset EGAD00001008323

• Chromatin accessibility (ATAC-seq) of human acute leukemias and healthy donors

  ATAC-seq of 79 primary samples obtained from human acute leukemias, namely AML, T-ALL and mixed myeloid/lymphoid leukemias with CpG Island Methylator Phenotype (CIMP). ATAC-seq of CD34+ HSPCs from 3 healthy donors is also included.

  Dataset EGAD00001011050

• Total RNA sequencing of RNA from testicular tissue

  Study EGAS00001006119

• Genomic Characterization of Duke Melanoma Brain Metastases

  Previous work has shown that melanoma brain metastases (MBM) have a unique molecular profile compared to extracranial metastases (ECM). Description of the biology of MBM and associations between biological features and clinical outcomes will facilitate the design of rational therapies for patients with MBM. To better characterize the molecular profile of MBM, we conducted whole exome sequencing (WES) and total RNA sequencing on MBM tissues obtained from an independent cohort of 14 patients from Duke University Medical Center. This cohort adds valuable patient samples to the field and enables strengthened investigation of somatic mutations and gene expression profiles within and between cohorts. The mutational landscape and gene expression of MBM from the Duke cohort resembled those previously reported in a previously published dataset of WES and RNA sequencing in MBM and matched ECM tissues from UT MD Anderson Cancer Center (Fischer et al., 2019 30787016). Duke MBM demonstrated similar rates of mutations in genes associated with melanoma, including BRAF, NRAS, and PTEN, as the MD Anderson cohort. Immune populations in MBM were similar between Duke and MD Anderson MBM, though Duke samples demonstrated more resting CD4+ memory T cells. The ratio of M2 to M1 macrophages in the Duke cohort was similar to that of the MD Anderson cohort. In MBM, a higher M2:M1 ratio may contribute to an immune-suppressive tumor microenvironment. Sequencing data and sample attributes from MBM tissues obtained from 14 patients from Duke University Medical Center will be available through dbGaP.

  Study phs003009

• Bulk RNA sequencing of SARC PDOs and UroCa PDOs.

  This dataset contains raw FASTQ files from bulk RNA sequencing of SarBC-01 organoids at different passages (Passage 6, Pssage 19, Passage 59), UroBC-01 organoids (Passage 70), UroBC-16 organoids (Passage 19) and UroBC-22 organoids (Passage 8). RNA was isolated using the Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001) and subjected to bulk RNA sequencing. TruSeq Stranded mRNA kit (Illumina, 20020594) was used for the library preparation according to manufacturer’s guidelines. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.

  Dataset EGAD00001011156

• Dataset for upper_gastrointestinal_tumor-RNA

  Rare cancer sequencing data of 44 runs in tumor/control pairs, which were uploaded to umbrella studies. The sequencing was always paired

  Dataset EGAD00001008853

• Tumor-derived cell lines as pharmacogenomic models to predict therapeutic vulnerabilities in hepatocellular carcinoma

  Hepatocellular carcinoma (HCC) is a heterogeneous aggressive malignancy with low efficacy of current therapies at advanced stages. We integrated molecular and pharmacological profiling of a large panel of liver cancer cell lines (LCCL) to assess their clinical relevance as HCC preclinical models and identify new effective therapies and biomarkers of response. Here, we performed multi-omic analysis including whole-exome, RNA and microRNA sequencing in a series 34 LCCL. Molecular profiles of LCCL and primary HCC were compared and we searched for molecular features associated with drug response. Our panel of LCCL faithfully recapitulated the most aggressive molecular “proliferation class” of HCC.

  Dataset EGAD00001004938

• Bulk RNA sequencing data in "Three-dimensional human alveolar stem cell culture models reveal infection response to SARS-CoV-2"

  This dataset includes 14 bulk RNA sequencing data (28 fastq files) in the study entitled "Three-dimensional human alveolar stem cell culture models reveal infection response to SARS-CoV-2". RNA sequencing library was generated with Truseq stranded total RNA Gold kit.

  Dataset EGAD00001006241

• ICGC MMML-seq Data Freeze November 2012 whole genome sequencing

  ICGC MMML-seq Data Freeze November 2012 whole genome sequencing

  Dataset EGAD00001000278

• ICGC MMML-seq Data Freeze November 2012 whole exome sequencing

  ICGC MMML-seq Data Freeze November 2012 whole exome sequencing

  Dataset EGAD00001000279

• ICGC MMML-seq Data Freeze March 2013 whole genome sequencing

  ICGC MMML-seq Data Freeze March 2013 whole genome sequencing

  Dataset EGAD00001000355

• ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing

  ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing

  Dataset EGAD00001000648

• EM-seq converted WGS for CSF-derived cfDNA from pediatric brain tumor patients

  EM-seq converted WGS for CSF-derived cfDNA from pediatric brain tumor patients

  Dataset EGAD50000001975

• Single cell RNAseq of PDAC organoids

  To study the role of WNT7B, three organoid lines were sequenced using SORT-Seq

  Study EGAS50000001544

• Patient data used in FLTseq paper

  Apply newly developed FLT-seq protocol and package FLAMES on a primary patient sample

  Study EGAS00001005597

• Reference epigenome Pancreas-Islet07 input ChIP-Seq data generated from KEP study

  Pancreas-Islet07 input ChIP-Seq paired end data

  Dataset EGAD00001007463

• Reference epigenome IPS-NPC02 input ChIP-Seq data generated from KEP study

  IPS-NPC02 input ChIP-Seq paired end data

  Dataset EGAD00001007290

• Reference epigenome ADMSC02_smRNA-Seq data generated from KEP study

  A ADMSC02_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003868

• Reference epigenome Pancreas-Islet07 h3k9me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet07 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007462

• Reference epigenome Pancreas-Islet02 h3k9me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007198

• Reference epigenome Kidney-Podocyte01 h3k4me1 ChIP-Seq data generated from KEP study

  Kidney-Podocyte01 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007231

• Reference epigenome Pancreas-Islet02 input ChIP-Seq data generated from KEP study

  Pancreas-Islet02 input ChIP-Seq paired end data

  Dataset EGAD00001007199

• Reference epigenome Pancreas-Islet03 h3k27me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet03 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007201

• Reference epigenome Pancreas-Islet03 h3k27ac ChIP-Seq data generated from KEP study

  Pancreas-Islet03 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007200

• Reference epigenome Fat-Preadipocyte01 h3k4me3 ChIP-Seq data generated from KEP study

  Fat-Preadipocyte01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007225

• Reference epigenome Fat-Preadipocyte01 h3k36me3 ChIP-Seq data generated from KEP study

  Fat-Preadipocyte01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007223

• Reference epigenome Kidney-Podocyte01 h3k27me3 ChIP-Seq data generated from KEP study

  Kidney-Podocyte01 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007229

• Reference epigenome Kidney-mesangial02 h3k36me3 ChIP-Seq data generated from KEP study

  Kidney-mesangial02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007258

• Reference epigenome IPS-Fibroblast02 h3k9me3 ChIP-Seq data generated from KEP study

  IPS-Fibroblast02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007275

• Reference epigenome IPS-ENeuron02 h3k4me3 ChIP-Seq data generated from KEP study

  IPS-ENeuron02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007302

• Reference epigenome IPS-NPC02 h3k27ac ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007284

• Reference epigenome Pancreas-Islet06 h3k36me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet06 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007452

• Reference epigenome Pancreas-Islet06 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-Islet06 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007453

• Reference epigenome Pancreas-Islet07 h3k4me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet07 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007461

• Reference epigenome Pancreas-Islet04 h3k4me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet04 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007211

• Reference epigenome Kidney-Podocyte03 h3k36me3 ChIP-Seq data generated from KEP study

  Kidney-Podocyte03 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007237

• Reference epigenome Pancreas-Islet08 h3k36me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet08 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007466

• Reference epigenome Pancreas-Islet08 h3k9me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet08 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007469

• Reference epigenome Fat-adipocyte03 h3k27ac ChIP-Seq data generated from KEP study

  Fat-adipocyte03 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007471

• Reference epigenome Fat-adipocyte04 h3k9me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte04 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007483

• Reference epigenome Fat-adipocyte04 h3k27ac ChIP-Seq data generated from KEP study

  Fat-adipocyte04 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007478

• Reference epigenome Fat-adipocyte04 h3k4me1 ChIP-Seq data generated from KEP study

  Fat-adipocyte04 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007481

• Reference epigenome Fat-adipocyte04 input ChIP-Seq data generated from KEP study

  Fat-adipocyte04 input ChIP-Seq paired end data

  Dataset EGAD00001007484

• Reference epigenome Fat-adipocyte05 h3k27ac ChIP-Seq data generated from KEP study

  Fat-adipocyte05 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007485

• Reference epigenome Fat-adipocyte05 h3k27me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte05 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007486

• Reference epigenome Fat-adipocyte05 h3k36me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte05 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007487

• Reference epigenome ADMSC03_smRNA-Seq data generated from KEP study

  A ADMSC03_smRNA-Seq single end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003869

• Reference epigenome Pancreas-Islet07 h3k27ac ChIP-Seq data generated from KEP study

  Pancreas-Islet07 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007457

• Reference epigenome IPS-NPC01 input ChIP-Seq data generated from KEP study

  IPS-NPC01 input ChIP-Seq paired end data

  Dataset EGAD00001007283

• Reference epigenome Pancreas-Islet08 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-Islet08 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007467

• Reference epigenome Fat-adipocyte03 h3k27me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte03 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007472

• Reference epigenome Pancreas-beta01 input ChIP-Seq data generated from KEP study

  Pancreas-beta01 input ChIP-Seq paired end data

  Dataset EGAD00001007220

• Reference epigenome Pancreas-Islet03 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-Islet03 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007203

• Reference epigenome Pancreas-Islet03 input ChIP-Seq data generated from KEP study

  Pancreas-Islet03 input ChIP-Seq paired end data

  Dataset EGAD00001007206

• Reference epigenome Pancreas-Islet04 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-Islet04 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007210

• Reference epigenome Pancreas-beta01 h3k27ac ChIP-Seq data generated from KEP study

  Pancreas-beta01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007214

• Reference epigenome Fat-Preadipocyte01 input ChIP-Seq data generated from KEP study

  Fat-Preadipocyte01 input ChIP-Seq paired end data

  Dataset EGAD00001007227

• Reference epigenome Pancreas-beta01 h3k36me3 ChIP-Seq data generated from KEP study

  Pancreas-beta01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007216

• Reference epigenome Pancreas-beta01 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-beta01 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007217

• Reference epigenome Pancreas-beta01 h3k4me3 ChIP-Seq data generated from KEP study

  Pancreas-beta01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007218

• Reference epigenome Fat-Preadipocyte01 h3k27ac ChIP-Seq data generated from KEP study

  Fat-Preadipocyte01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007221

• Reference epigenome Fat-Preadipocyte01 h3k9me3 ChIP-Seq data generated from KEP study

  Fat-Preadipocyte01 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007226

• Reference epigenome Kidney-Podocyte03 h3k27ac ChIP-Seq data generated from KEP study

  Kidney-Podocyte03 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007235

• Reference epigenome Kidney-Podocyte04 input ChIP-Seq data generated from KEP study

  Kidney-Podocyte04 input ChIP-Seq paired end data

  Dataset EGAD00001007248

• Reference epigenome Kidney-mesangial01 h3k36me3 ChIP-Seq data generated from KEP study

  Kidney-mesangial01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007251

• Reference epigenome Kidney-mesangial02 h3k27ac ChIP-Seq data generated from KEP study

  Kidney-mesangial02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007256

• Reference epigenome IPS-NPC02 h3k4me1 ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007287

• Reference epigenome Kidney-mesangial02 h3k27me3 ChIP-Seq data generated from KEP study

  Kidney-mesangial02 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007257

• Reference epigenome Kidney-mesangial01 h3k27me3 ChIP-Seq data generated from KEP study

  Kidney-mesangial01 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007250

• Reference epigenome Kidney-mesangial02 input ChIP-Seq data generated from KEP study

  Kidney-mesangial02 input ChIP-Seq paired end data

  Dataset EGAD00001007262

• Reference epigenome IPS-Fibroblast01 h3k27ac ChIP-Seq data generated from KEP study

  IPS-Fibroblast01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007263

• Reference epigenome IPS-NPC02 h3k27me3 ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007285

• Reference epigenome IPS-NPC02 h3k36me3 ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007286

• Reference epigenome IPS-NPC02 h3k9me3 ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007289

• Reference epigenome IPS-ENeuron02 h3k4me1 ChIP-Seq data generated from KEP study

  IPS-ENeuron02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007301

• Reference epigenome Fat-adipocyte05 h3k4me1 ChIP-Seq data generated from KEP study

  Fat-adipocyte05 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007488

• Reference epigenome Fat-adipocyte05 h3k4me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte05 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007489

• Reference epigenome Fat-adipocyte05 input ChIP-Seq data generated from KEP study

  Fat-adipocyte05 input ChIP-Seq paired end data

  Dataset EGAD00001007491

• Reference epigenome DB31_N_Alpha_smRNA-Seq data generated from KEP study

  A DB31_N_Alpha_smRNA-Seq single end data for alpha cells(PSA-NCAM(-), pancreas)

  Dataset EGAD00001003494

• Reference epigenome IPS-NPC01 h3k4me3 ChIP-Seq data generated from KEP study

  IPS-NPC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007281

• Reference epigenome Kidney-Podocyte01 h3k27ac ChIP-Seq data generated from KEP study

  Kidney-Podocyte01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007228

• Reference epigenome Fat-adipocyte03 h3k9me3 ChIP-Seq data generated from KEP study

  Fat-adipocyte03 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007476

• 4C-Seq datasets of EndoC-bh1

  2 Circular chromosome conformation capture (4C-Seq) datasets of the human beta cell line EndoC-bh1.

  Dataset EGAD00001005210

• Reference epigenome IPS-Fibroblast02 h3k4me1 ChIP-Seq data generated from KEP study

  IPS-Fibroblast02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007273

• Reference epigenome Kidney-Podocyte04 h3k27me3 ChIP-Seq data generated from KEP study

  Kidney-Podocyte04 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007243

• Reference epigenome DB31_N_Alpha_mRNA-Seq data generated from KEP study

  A DB31_N_Alpha_mRNA-Seq paired end data for alpha cells(PSA-NCAM(-), pancreas)

  Dataset EGAD00001003485

• Reference epigenome Pancreas-Islet02 h3k4me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007197

• Reference epigenome Pancreas-Islet02 h3k27me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet02 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007194

• Reference epigenome Pancreas-Islet02 h3k4me1 ChIP-Seq data generated from KEP study

  Pancreas-Islet02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007196

• Reference epigenome Pancreas-Islet03 h3k36me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet03 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007202

• Reference epigenome Pancreas-Islet04 h3k9me3 ChIP-Seq data generated from KEP study

  Pancreas-Islet04 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007212