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12080 results for "cancer rna-seq"

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Study type

affected sib pairs aggregate genomic data amplicon sequencing atac sequencing cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing extended pedigrees family forensic or paleo-genomics full transcriptome sequencing gene regulation study genotype genotype/expression gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery mendelian meta-analysis metagenomics metastasis methods development nested case-control observational other parent-offspring trios partial factorial randomized phase iii pooled clone sequencing population population genomics prospective randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence single cell rna sequencing stem cell lines synthetic genomics targeted capture sequence transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs flx titanium ab 3730xl genetic analyzer ab 5500 genetic analyzer ab 5500xl genetic analyzer ab 5500xl-w genetic analysis system ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system affymetrics_snp_6.0- affymetrix 6.0 array affymetrix genechip scanner 3000 7g affymetrix hg_u133_+2 affymetrix human genome u133 plus 2.0 array affymetrix snp 6.0 affymetrix snp6.0 affymetrix_snp6- agilent agilent mirna microarrays agilent sureselectxt human methyl. seq aperio aperio image - h&e stained tissue_section beadarray bgiseq-500 complete genomics cytoscan dnbseq-g400 dnbseq-t7 epic beadchip (illumina, san diego, ca) exiqon 7th generation mircury lna microrna microarray system genechip human mapping 250k nspi genome-wide human snp array 6.0 - thermo fisher scientific gridion gsa-md v3 h and e image hiseq x five hiseq x ten illlumina ht12 v3 illumina illumina 15k illumina 2.5m illumina 450k illumina 850k illumina cytosnp 12 bead array illumina epic 450k beadchip assay illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscan illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2000;illumina illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina hiseq4000 illumina ht 12 illumina humanexome array illumina humanmethylationepic v1 illumina humanwg-6 illumina humanwg-6 version 3 or illumina humanht-12 expression bead chip, combined on identical nucleotide universal identifiers. illumina infinium global screening array-24 illumina infinium human global screening array gsamd-24v2-0_20024620_a1 beadchip illumina infinium humanmethylation450k illumina infinium methylationepic beadchip (850 k) illumina iseq 100 illumina methylationepic array illumina methylationepic beadchip arrays illumina miniseq illumina miseq illumina nextseq-500 illumina novaseq 6000 illumina novaseq x illumina novaseq x plus illumina oncoarray illumina_humanht-12v4 illuminahuman awg-6 and ht12 illuminahuman ht12 infinium cytosnp-850k v1.4 bead chips array, illumina infinium methylationepic beadchip infinium methylationepic beadchip array infinium methylationepic v2.0 beadchip ion genestudio s5 ion genestudio s5 prime ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid medip-seq mgiseq-2000rs minion miseq nanostring nanostring cancer immune nanostring cancer pathway nanostring ncounter nanostring ncounter max/flex nanostring ncounterâ® pancancer io 360â„¢ nanostring panel nanostring technology nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 novaseq 6000 oligonucleotide beads of humanht-12 v4 r2 expression beadchips (illumina) oncoscan pacbio rs pacbio rs ii paired rna-sequencing data promethion qexactive plus revio rnaseq sequel sequel ii single cell rna-seq smartseq2_adapted snp array thermo orbitrap tribrid mass spectrometer unspecified

Phenotypes

[CHEBI:33699] [CL:0000037] [CL:0000038] [CL:0000041] [CL:0000049] [CL:0000050] [CL:0000051] [CL:0000057] [CL:0000092] [CL:0000096] [CL:0000235] [CL:0000236] [CL:0000499] [CL:0000523] [CL:0000557] [CL:0000560] [CL:0000576] [CL:0000580] [CL:0000582] [CL:0000624] [CL:0000625] [CL:0000765] [CL:0000786] [CL:0000787] [CL:0000788] [CL:0000809] [CL:0000810] [CL:0000811] [CL:0000815] [CL:0000817] [CL:0000837] [CL:0000840] [CL:0000841] [CL:0000842] [CL:0000844] [CL:0000863] [CL:0000890] [CL:0000893] [CL:0000896] [CL:0000904] [CL:0000905] [CL:0000907] [CL:0000913] [CL:0000939] [CL:0000945] [CL:0000970] [CL:0000972] [CL:0000990] [CL:0001024] [CL:0001059] [CL:0001062] [CL:0001066] [CL:0002015] [CL:0002026] [CL:0002057] [CL:0002092] [CL:0002102] [CL:0002324] [CL:0002326] [CL:0002420] [CL:0002489] [CL:0002540] [CL:0002555] [CL:0002618] [CL:0002619] [CL:0010004] [CL:0011114] [CL:2000006] [DOID:0050756] [EFO:0000001] [EFO:0000094] [EFO:0000095] [EFO:0000174] [EFO:0000182] [EFO:0000183] [EFO:0000196] [EFO:0000198] [EFO:0000209] [EFO:0000220] [EFO:0000222] [EFO:0000228] [EFO:0000239] [EFO:0000248] [EFO:0000272] [EFO:0000280] [EFO:0000285] [EFO:0000292] [EFO:0000305] [EFO:0000308] [EFO:0000309] [EFO:0000310] [EFO:0000311] [EFO:0000312] [EFO:0000313] [EFO:0000314] [EFO:0000315] [EFO:0000316] [EFO:0000317] [EFO:0000318] [EFO:0000319] [EFO:0000320] [EFO:0000321] [EFO:0000322] [EFO:0000323] [EFO:0000324] [EFO:0000325] [EFO:0000326] [EFO:0000327] [EFO:0000328] [EFO:0000329] [EFO:0000330] [EFO:0000331] [EFO:0000332] [EFO:0000333] [EFO:0000334] [EFO:0000335] [EFO:0000336] [EFO:0000337] [EFO:0000338] [EFO:0000339] [EFO:0000340] [EFO:0000341] [EFO:0000342] [EFO:0000343] [EFO:0000344] [EFO:0000345] [EFO:0000346] [EFO:0000347] [EFO:0000348] [EFO:0000349] [EFO:0000350] [EFO:0000351] [EFO:0000352] [EFO:0000353] [EFO:0000354] [EFO:0000355] [EFO:0000356] [EFO:0000357] [EFO:0000358] [EFO:0000359] [EFO:0000360] [EFO:0000361] [EFO:0000362] [EFO:0000363] [EFO:0000364] [EFO:0000365] [EFO:0000366] [EFO:0000367] [EFO:0000368] [EFO:0000369] [EFO:0000370] [EFO:0000371] [EFO:0000372] [EFO:0000373] [EFO:0000374] [EFO:0000402] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000503] [EFO:0000519] [EFO:0000540] [EFO:0000571] [EFO:0000574] [EFO:0000609] [EFO:0000616] [EFO:0000621] [EFO:0000632] [EFO:0000637] [EFO:0000641] [EFO:0000681] [EFO:0000691] [EFO:0000693] [EFO:0000702] [EFO:0000708] [EFO:0000730] [EFO:0000756] [EFO:0000760] [EFO:0000761] [EFO:0000762] [EFO:0000848] [EFO:0000869] [EFO:0000887] [EFO:0000934] [EFO:0000973] [EFO:0000980] [EFO:0001071] [EFO:0001073] [EFO:0001074] [EFO:0001075] [EFO:0001076] [EFO:0001077] [EFO:0001078] [EFO:0001079] [EFO:0001080] [EFO:0001081] [EFO:0001360] [EFO:0001376] [EFO:0001378] [EFO:0001461] [EFO:0001639] [EFO:0001663] [EFO:0002001] [EFO:0002002] [EFO:0002324] [EFO:0002394] [EFO:0002422] [EFO:0002424] [EFO:0002429] [EFO:0002517] [EFO:0002532] [EFO:0002539] [EFO:0002618] [EFO:0002787] [EFO:0002793] [EFO:0002824] [EFO:0002884] [EFO:0002885] [EFO:0002886] [EFO:0002887] [EFO:0002888] [EFO:0002889] [EFO:0002890] [EFO:0002891] [EFO:0002892] [EFO:0002916] [EFO:0002918] [EFO:0002933] [EFO:0002937] [EFO:0002939] [EFO:0002966] [EFO:0003025] [EFO:0003032] [EFO:0003060] [EFO:0003094] [EFO:0003137] [EFO:0003811] [EFO:0003825] [EFO:0003897] [EFO:0003942] [EFO:0004422] [EFO:0004708] [EFO:0004905] [EFO:0005023] [EFO:0005235] [EFO:0005406] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005701] [EFO:0005704] [EFO:0005705] [EFO:0005706] [EFO:0005707] [EFO:0005708] [EFO:0005709] [EFO:0005710] [EFO:0005711] [EFO:0005712] [EFO:0005740] [EFO:0005803] [EFO:0005842] [EFO:0005844] [EFO:0005922] [EFO:0006460] [EFO:0006461] [EFO:0006492] [EFO:0006545] [EFO:0006852] [EFO:0007143] [EFO:0007336] [EFO:0007362] [EFO:0007365] [EFO:0007483] [EFO:0008498] [EFO:0008524] [EFO:0009052] [EFO:0009119] [EFO:0009120] [EFO:0009121] [EFO:0009375] [EFO:0009443] [EFO:0009602] [EFO:0009654] [EFO:0009744] [EFO:0009907] [EFO:0010105] [EFO:1000028] [EFO:1000042] [EFO:1000043] [EFO:1000069] [EFO:1000075] [EFO:1000101] [EFO:1000102] [EFO:1000128] [EFO:1000138] [EFO:1000139] [EFO:1000144] [EFO:1000149] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000307] [EFO:1000311] [EFO:1000318] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000388] [EFO:1000414] [EFO:1000416] [EFO:1000429] [EFO:1000453] [EFO:1000490] [EFO:1000575] [EFO:1000646] [EFO:1000796] [EFO:1000950] [EFO:1001038] [EFO:1001100] [EFO:1001230] [EFO:1001480] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001946] [EFO:1001950] [EFO:1001951] [EFO:1001956] [EFO:1001958] [EFO:1001963] [EFO:1002008] [HP:0000028] [HP:0000077] [HP:0000078] [HP:0000122] [HP:0000138] [HP:0000153] [HP:0000160] [HP:0000175] [HP:0000194] [HP:0000201] [HP:0000219] [HP:0000232] [HP:0000248] [HP:0000268] [HP:0000272] [HP:0000277] [HP:0000280] [HP:0000286] [HP:0000307] [HP:0000311] [HP:0000316] [HP:0000322] [HP:0000331] [HP:0000343] [HP:0000347] [HP:0000356] [HP:0000358] [HP:0000403] [HP:0000405] [HP:0000422] [HP:0000431] [HP:0000457] [HP:0000463] [HP:0000474] [HP:0000483] [HP:0000486] [HP:0000490] [HP:0000494] [HP:0000506] [HP:0000519] [HP:0000527] [HP:0000535] [HP:0000572] [HP:0000582] [HP:0000588] [HP:0000629] [HP:0000664] [HP:0000687] [HP:0000708] [HP:0000713] [HP:0000718] [HP:0000722] [HP:0000729] [HP:0000735] [HP:0000736] [HP:0000739] [HP:0000750] [HP:0000752] [HP:0000767] [HP:0000787] [HP:0000817] [HP:0000871] [HP:0000921] [HP:0000939] [HP:0000953] [HP:0000954] [HP:0000957] [HP:0000978] [HP:0001028] [HP:0001053] [HP:0001182] [HP:0001249] [HP:0001250] [HP:0001252] [HP:0001256] [HP:0001258] [HP:0001263] [HP:0001269] [HP:0001270] [HP:0001276] [HP:0001328] [HP:0001380] [HP:0001382] [HP:0001508] [HP:0001510] [HP:0001513] [HP:0001622] [HP:0001629] [HP:0001631] [HP:0001642] [HP:0001643] [HP:0001680] [HP:0001782] [HP:0001800] [HP:0001824] [HP:0001845] [HP:0001848] [HP:0001863] [HP:0001864] [HP:0001999] [HP:0002013] [HP:0002019] [HP:0002020] [HP:0002061] [HP:0002062] [HP:0002092] [HP:0002123] [HP:0002194] [HP:0002208] [HP:0002211] [HP:0002232] [HP:0002236] [HP:0002307] [HP:0002317] [HP:0002353] [HP:0002465] [HP:0002474] [HP:0002574] [HP:0002705] [HP:0002714] [HP:0002757] [HP:0002779] [HP:0002926] [HP:0003121] [HP:0003125] [HP:0003186] [HP:0003196] [HP:0003808] [HP:0004322] [HP:0004325] [HP:0004349] [HP:0004370] [HP:0004474] [HP:0004482] [HP:0005180] [HP:0005487] [HP:0005831] [HP:0006934] [HP:0006986] [HP:0007328] [HP:0007526] [HP:0007544] [HP:0007663] [HP:0007970] [HP:0008115] [HP:0008404] [HP:0008551] [HP:0008734] [HP:0008935] [HP:0009927] [HP:0009928] [HP:0009933] [HP:0010562] [HP:0010743] [HP:0010751] [HP:0010862] [HP:0010863] [HP:0011090] [HP:0011123] [HP:0011220] [HP:0011311] [HP:0011344] [HP:0011471] [HP:0011645] [HP:0011800] [HP:0011924] [HP:0011968] [HP:0012382] [HP:0012443] [HP:0012448] [HP:0012450] [HP:0012471] [HP:0012646] [HP:0012741] [HP:0012745] [HP:0030055] [HP:0030190] [HP:0030276] [HP:0030517] [HP:0040019] [HP:0040199] [HP:0100022] [HP:0100033] [HP:0100559] [HP:0100814] [HP:0100880] [MONDO:0000430] [MONDO:0000870] [MONDO:0000872] [MONDO:0001056] [MONDO:0002397] [MONDO:0002598] [MONDO:0002601] [MONDO:0002627] [MONDO:0002630] [MONDO:0002631] [MONDO:0002678] [MONDO:0002728] [MONDO:0002924] [MONDO:0003002] [MONDO:0003142] [MONDO:0003537] [MONDO:0003572] [MONDO:0003751] [MONDO:0004950] [MONDO:0004952] [MONDO:0005005] [MONDO:0005062] [MONDO:0005072] [MONDO:0005184] [MONDO:0005575] [MONDO:0006058] [MONDO:0007254] [MONDO:0007255] [MONDO:0007256] [MONDO:0007257] [MONDO:0007258] [MONDO:0007259] [MONDO:0007260] [MONDO:0007261] [MONDO:0007262] [MONDO:0007263] [MONDO:0007264] [MONDO:0007265] [MONDO:0007266] [MONDO:0007267] [MONDO:0007268] [MONDO:0007269] [MONDO:0007270] [MONDO:0007271] [MONDO:0007272] [MONDO:0007273] [MONDO:0007274] [MONDO:0007275] [MONDO:0007276] [MONDO:0007277] [MONDO:0007278] [MONDO:0007279] [MONDO:0007280] [MONDO:0007281] [MONDO:0007282] [MONDO:0007283] [MONDO:0007284] [MONDO:0007285] [MONDO:0007286] [MONDO:0007287] [MONDO:0007288] [MONDO:0007289] [MONDO:0007290] [MONDO:0007291] [MONDO:0007292] [MONDO:0007293] [MONDO:0007294] [MONDO:0007295] [MONDO:0007296] [MONDO:0007297] [MONDO:0007298] [MONDO:0007299] [MONDO:0007300] [MONDO:0007301] [MONDO:0007302] [MONDO:0007303] [MONDO:0007304] [MONDO:0007305] [MONDO:0007306] [MONDO:0007307] [MONDO:0007308] [MONDO:0007309] [MONDO:0007310] [MONDO:0007311] [MONDO:0007312] [MONDO:0007313] [MONDO:0007314] [MONDO:0007315] [MONDO:0007316] [MONDO:0007317] [MONDO:0007318] [MONDO:0007319] [MONDO:0007320] [MONDO:0007321] [MONDO:0007322] [MONDO:0007323] [MONDO:0007324] [MONDO:0007325] [MONDO:0007326] [MONDO:0007327] [MONDO:0007328] [MONDO:0007329] [MONDO:0007330] [MONDO:0007331] [MONDO:0007332] [MONDO:0007333] [MONDO:0007334] [MONDO:0007335] [MONDO:0007336] [MONDO:0007337] [MONDO:0007338] [MONDO:0007339] [MONDO:0007340] [MONDO:0007341] [MONDO:0007342] [MONDO:0007343] [MONDO:0007344] [MONDO:0007345] [MONDO:0007346] [MONDO:0007347] [MONDO:0007348] [MONDO:0007349] [MONDO:0007350] [MONDO:0007351] [MONDO:0007352] [MONDO:0007353] [MONDO:0007354] [MONDO:0007355] [MONDO:0007356] [MONDO:0007357] [MONDO:0007358] [MONDO:0007359] [MONDO:0007360] [MONDO:0007361] [MONDO:0007362] [MONDO:0007363] [MONDO:0007364] [MONDO:0007365] [MONDO:0007366] [MONDO:0007367] [MONDO:0007368] [MONDO:0007369] [MONDO:0007370] [MONDO:0007371] [MONDO:0007372] [MONDO:0008170] [MONDO:0008903] [MONDO:0013296] [MONDO:0015760] [MONDO:0016690] [MONDO:0016691] [MONDO:0016692] [MONDO:0016698] [MONDO:0016700] [MONDO:0016735] [MONDO:0017043] [MONDO:0017349] [MONDO:0017387] [MONDO:0017590] [MONDO:0018177] [MONDO:0018874] [MONDO:0018905] [MONDO:0018908] [MONDO:0019087] [MONDO:0019457] [MONDO:0019470] [MONDO:0019474] [MONDO:0020511] [MONDO:0020560] [MONDO:0020580] [MONDO:0020663] [MONDO:0021335] [MONDO:0044335] [MONDO:0100096] [MONDO:0100342] [NCIT:C0549184] [NCIT:C115935] [NCIT:C200033] [NCIT:C25588] [NCIT:C27204] [NCIT:C2952] [NCIT:C3099] [NCIT:C3283] [NCIT:C4737] [NCIT:C4912] [NCIT:C7899] [Orphanet:110] [Orphanet:124] [Orphanet:183518] [Orphanet:217569] [Orphanet:2322] [Orphanet:552] [Orphanet:63] [Orphanet:654] [Orphanet:68367] [Orphanet:791] [Orphanet:811] [Orphanet:886] [Orphanet:98664] [PATO:0000461] [PATO:0000463] [PATO:0000464] [PATO:0000465] [PATO:0000466] [PATO:0000468] [PATO:0000469] [PATO:0000470] [PATO:0000471] [PATO:0000472] [UBERON:0000178] [UBERON:0000310] [UBERON:0000397] [UBERON:0000966] [UBERON:0000992] [UBERON:0001134] [UBERON:0001156] [UBERON:0001159] [UBERON:0001968] [UBERON:0002046] [UBERON:0002107] [UBERON:0002328] [UBERON:0002371] [UBERON:0002372] [UBERON:0003483] [UBERON:0003706] [UBERON:0003707] [UBERON:0003708] [UBERON:0003709] [UBERON:0003710] [UBERON:0003711] [UBERON:0003712] [UBERON:0003713] [UBERON:0003714] [UBERON:0003715] [UBERON:0003716] [UBERON:0003717] [UBERON:0003718] [UBERON:0003719] [UBERON:0003720] [UBERON:0003721] [UBERON:0003722] [UBERON:0003723] [UBERON:0003724] [UBERON:0003725] [UBERON:0003726] [UBERON:0003727] [UBERON:0003728] [UBERON:0003729] [UBERON:0003730] [UBERON:0003731] [UBERON:0003732] [UBERON:0003889] [UBERON:0005351] [UBERON:0010393] [UBERON:0012168] [UBERON:0013756]

Duo

0000001 0000004 0000005 0000006 0000007 0000010 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

Germline WES data of pediatric cancer patients

This dataset includes bam files (aligned to hg38) from the germline of pediatric cancer patients.
Dataset EGAD00001008763
Targeted analysis of chondrosarcoma cancer genes (2019-04-01)

Targeted analysis of chondrosarcoma cancer genes . This dataset contains all the data available for this study on 2019-04-01.
Dataset EGAD00001004877
Bulk tumor RNAseq of bladder cancer patients

RNAseq fastq files from 611 bulk pre-treatment tumors from two indications: metastatic urothelial bladder cancer patients (IMvigor210) and metastatic renal cell carcinoma (IMmotion150)
Dataset EGAD00001006960
Geographic and age-related variations in mutational processes in colorectal cancer - patient metadata files (Mutographs)

Geographic and age-related variations in mutational processes in colorectal cancer - patient metadata files (Mutographs)
Dataset EGAD00001015437
Ovarian cancer organoid biobank - followup

WGS of more samples in the ovarian cancer organoid biobank dataset.
Dataset EGAD00001005707
The complexity of tobacco smoke induced mutagenesis in head and neck cancer - sequence data (Mutographs)

The complexity of tobacco smoke induced mutagenesis in head and neck cancer - sequence data (Mutographs)
Dataset EGAD00001015386
Geographic and age-related variations in mutational processes in colorectal cancer - copy number variants (Mutographs)

Geographic and age-related variations in mutational processes in colorectal cancer - copy number variants (Mutographs)
Dataset EGAD00001015487
Colorectal organoids and tumoroids - pulldown

Targeted capture of cancer gene panel bait set in single cell derived organoids from colon tissue and colorectal cancer from 1 patient.
Dataset EGAD00001001208
Transcriptome of biliary tract cancer

Fastq files of RNAseq of 182 samples of biliary tract cancer
Dataset EGAD00001001693
MSI_Cancer_Models___WGS

The study will use whole genome sequencing to aid in define determinants of WRN dependency in MSI Cancer models.
Study EGAS00001004178

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